RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 BROXQ5VW32 411 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 LCN8Q6JVE9 175 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 RNF180Q86T96 592 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 DTWD1Q8N5C7 304 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 CLHC1Q8NHS4 586 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 SH3YL1Q96HL8 342 aaPredicted RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 NSMCE2Q96MF7 247 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 AIG1Q9NVV5 245 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 CPQQ9Y646 472 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 STC2O76061 302 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 HTR1AP08908 422 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 IDO1P14902 403 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 TPTEP56180 551 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 RCAN2Q14206 197 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 INAVAQ3KP66 663 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ZNF773Q6PK81 442 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 Q6ZSR9 355 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 CRIPAKQ8N1N5 446 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 RPL3LQ92901 407 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 LINGO1Q96FE5 620 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ALPK1Q96QP1 1244 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 HGH1Q9BTY7 390 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 C1QTNF3Q9BXJ4 246 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 LIMD1Q9UGP4 676 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ZMYM5Q9UJ78 669 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 A0A1W2PP18 115 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 A0A1W2PQ45 241 aaPredicted RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 A0A1W2PQY0 241 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 OR4F21O95013 312 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 DIRAS1O95057 198 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 SEC24AO95486 1093 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 PKMP14618 531 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 HMGA1P17096 107 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 CORO1AP31146 461 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ERVPABLB-1P60509 514 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ADARB1P78563 741 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 SREBF2Q12772 1141 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 NKG7Q16617 165 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 LETMD1Q6P1Q0 360 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 GALNT10Q86SR1 603 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 PHACTR4Q8IZ21 702 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 TTC30BQ8N4P2 665 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 FBXO22Q8NEZ5 403 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 UBE2FQ969M7 185 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 FEM1AQ9BSK4 669 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 VN1R3Q9BXE9 311 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 ZNF229Q9UJW7 825 aa12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 PTBP2Q9UKA9 531 aaKnown RBP12.35□□□□□ -0.43
SFSWAP-208ENST00000539506 C2orf78A6NCI8 922 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 C2orf81A6NN90 581 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 NADKO95544 446 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 THRBP10828 461 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 IRF1P10914 325 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 LPOP22079 712 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 HTR6P50406 440 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 NCS1P62166 190 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 SF3B4Q15427 424 aaKnown RBP eCLIP12.34□□□□□ -0.432e-7■■■□□ 16.3
SFSWAP-208ENST00000539506 ZRANB3Q5FWF4 1079 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 RNF219Q5W0B1 726 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 NIPAL1Q6NVV3 410 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 PSMA8Q8TAA3 256 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 ITFG1Q8TB96 612 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 PROKR1Q8TCW9 393 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 PPP1R14BQ96C90 147 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 AURKBQ96GD4 344 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 C17orf80Q9BSJ5 609 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 THUMPD3Q9BV44 507 aaKnown RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 AMBRA1Q9C0C7 1298 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 CCDC68Q9H2F9 335 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 ABCB10Q9NRK6 738 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 PAK1IP1Q9NWT1 392 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 MTRRQ9UBK8 725 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 PCDHB7Q9Y5E2 793 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 ARVCFO00192 962 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 E2F6O75461 281 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 SLC22A3O75751 556 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 B3GALT4O96024 378 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 FTH1P02794 183 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 RHOCP08134 193 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 MZF1P28698 734 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 CLCN7P51798 805 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 POLR2JP52435 117 aaKnown RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 CD47Q08722 323 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 INAQ16352 499 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 SMN1Q16637 294 aaKnown RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 LRRC8DQ7L1W4 858 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 CLIP4Q8N3C7 705 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 SLC43A3Q8NBI5 491 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 OR10A6Q8NH74 314 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 ZNF420Q8TAQ5 688 aaPredicted RBP12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 ADAMTS16Q8TE57 1224 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 DOK1Q99704 481 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 TTPALQ9BTX7 342 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 BDH2Q9BUT1 245 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 NACA2Q9H009 215 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 FBXO10Q9UK96 956 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 COMMD10Q9Y6G5 202 aa12.34□□□□□ -0.43
SFSWAP-208ENST00000539506 ILVBLA1L0T0 632 aa12.33□□□□□ -0.44
SFSWAP-208ENST00000539506 TRIM64CA6NLI5 447 aa12.33□□□□□ -0.44
SFSWAP-208ENST00000539506 STX16O14662 325 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms