RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TRNAU1APQ9NX07 287 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 B4GALT6Q9UBX8 382 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 ZC3H7BQ9UGR2 993 aaKnown RBP12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 PKP3Q9Y446 797 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 TCAF1Q9Y4C2 921 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 PCDHB3Q9Y5E6 796 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CROCCQ5TZA2 2017 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 FBN3Q75N90 2809 aa12.26□□□□□ -0.45
CLSTN3-208ENST00000538933 CCDC151A5D8V7 595 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 A8MU76 341 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 TP73O15350 636 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 STX7O15400 261 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 RECKO95980 971 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 POLBP06746 335 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 FAM153BP0C7A2 387 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 ELFN1P0C7U0 828 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 ZNF28P17035 718 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 ZNF30P17039 623 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 LPOP22079 712 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 PHBP35232 272 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 DLSTP36957 453 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 MAGEA3P43357 314 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 GPLD1P80108 840 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 TAF1AQ15573 450 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 FAM153CQ494X1 144 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 MSS51Q4VC12 460 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 PNCKQ6P2M8 343 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 WDR74Q6RFH5 385 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 LYSMD3Q7Z3D4 306 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 MPP5Q8N3R9 675 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 ZNF669Q96BR6 464 aaPredicted RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 C9orf72Q96LT7 481 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 RANBP9Q96S59 729 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 EBNA1BP2Q99848 306 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 GSDMCQ9BYG8 508 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 CARS2Q9HA77 564 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 ZFYVE1Q9HBF4 777 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 SIDT1Q9NXL6 827 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 PKD2L2Q9NZM6 624 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 CROTQ9UKG9 612 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 SOX13Q9UN79 622 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 OAS3Q9Y6K5 1087 aaKnown RBP12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 NAV3Q8IVL0 2385 aa12.25□□□□□ -0.45
CLSTN3-208ENST00000538933 MAP1AP78559 2803 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 NPIPB15A6NHN6 443 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 E7ESA3 106 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SPAG6O75602 509 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 TTC4O95801 387 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 PRAMEP78395 509 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 TMPRSS15P98073 1019 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 CTBSQ01459 385 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 ILF3Q12906 894 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 FASTKD3Q14CZ7 662 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SPANXN3Q5MJ09 141 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 TSTD2Q5T7W7 516 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 ARMC3Q5W041 872 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 LRRC66Q68CR7 880 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SLC30A9Q6PML9 568 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 LIPIQ6XZB0 460 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 TRMT10CQ7L0Y3 403 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 DPPA4Q7L190 304 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 OTUD6BQ8N6M0 293 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 GABPB2Q8TAK5 448 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 AENQ8WTP8 325 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 STYXQ8WUJ0 223 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SPOCK2Q92563 424 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SIGLEC10Q96LC7 697 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SMIM14Q96QK8 99 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 MCCC1Q96RQ3 725 aaPredicted RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 CDC42EP4Q9H3Q1 356 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 MRM3Q9HC36 420 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 PPANQ9NQ55 473 aaKnown RBP12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 CHRAC1Q9NRG0 131 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 MOSPD1Q9UJG1 213 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 PPIL1Q9Y3C6 166 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 PCDHGA6Q9Y5G7 932 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 SPO11Q9Y5K1 396 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 ARL5AQ9Y689 179 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 TEX264Q9Y6I9 313 aa12.24□□□□□ -0.45
CLSTN3-208ENST00000538933 FAM237BA0A1B0GVD1 139 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 CDC14CA4D256 554 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 POLR1CO15160 346 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 BUD23O43709 281 aaKnown RBP12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 CREG1O75629 220 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 USP1O94782 785 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 CLDN7O95471 211 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 CBX6O95503 412 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 ACSL3O95573 720 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 HADHAP40939 763 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 FASLGP48023 281 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 ACOX1Q15067 660 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 SNAP47Q5SQN1 464 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 CES3Q6UWW8 571 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 TMC3Q7Z5M5 1100 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 TSPAN33Q86UF1 283 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 ZNF761Q86XN6 746 aaPredicted RBP12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 OR4K2Q8NGD2 314 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 CAVIN3Q969G5 261 aa12.23□□□□□ -0.45
CLSTN3-208ENST00000538933 LYSMD1Q96S90 227 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms