RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 UBAP2LQ14157 1087 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 SUZ12Q15022 739 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 TBCCQ15814 346 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CCDC157Q569K6 752 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 EPGNQ6UW88 154 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 LSMEM2Q8N112 164 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CHCHD4Q8N4Q1 142 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PIH1D2Q8WWB5 315 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ECHDC3Q96DC8 303 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CCDC126Q96EE4 140 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CNTNAP3BQ96NU0 1288 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 TUBGCP5Q96RT8 1024 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CNTNAP3Q9BZ76 1288 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 MAGEE1Q9HCI5 957 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 UCKL1Q9NWZ5 548 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 TOR4AQ9NXH8 423 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 NCKIPSDQ9NZQ3 722 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ARID1BQ8NFD5 2236 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 TSPAN11A1L157 253 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 MATN2O00339 956 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 NPHS1O60500 1241 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 TM7SF2O76062 418 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ENO1P06733 434 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ALPIP09923 528 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 C6P13671 934 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ZNF37AP17032 561 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CTPS1P17812 591 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 FMO4P31512 558 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 MMP12P39900 470 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 GRK6P43250 576 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PDAP1Q13442 181 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 RIPK1Q13546 671 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 BRAT1Q6PJG6 821 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PIWIL4Q7Z3Z4 852 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PIANPQ8IYJ0 282 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 EID2Q8N6I1 236 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 MAPK15Q8TD08 544 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 FAM136AQ96C01 138 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 BTBD10Q9BSF8 475 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 SCNM1Q9BWG6 230 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 GPR63Q9BZJ6 419 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ALG9Q9H6U8 611 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ERVMER34-1Q9H9K5 563 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 CYP4F12Q9HCS2 524 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 KLF15Q9UIH9 416 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 ANGPTL2Q9UKU9 493 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PNMA8BQ9ULN7 279 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 VPS9D1Q9Y2B5 631 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 PKP3Q9Y446 797 aa11.74□□□□□ -0.53
CLIP1-208ENST00000537004 DSPP15924 2871 aaKnown RBP11.74□□□□□ -0.53
CLIP1-208ENST00000537004 A8MT66 165 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 A8MUI8 341 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 H7C0S8 307 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 HDAC3O15379 428 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 HTRA2O43464 458 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-208ENST00000537004 ZBTB14O43829 449 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 DFNA5O60443 496 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 SRP72O76094 671 aaKnown RBP11.73□□□□□ -0.53
CLIP1-208ENST00000537004 IPO13O94829 963 aaKnown RBP11.73□□□□□ -0.53
CLIP1-208ENST00000537004 ATP6V1G2O95670 118 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 CD1DP15813 335 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 IGFALSP35858 605 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 HMGCLP35914 325 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 RXRGP48443 463 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 TTPAP49638 278 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 HK2P52789 917 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 RPL26P61254 145 aaKnown RBP11.73□□□□□ -0.53
CLIP1-208ENST00000537004 PEX6Q13608 980 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 FZD2Q14332 565 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 SNCBQ16143 134 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 SLC9B1Q4ZJI4 515 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 ZRANB3Q5FWF4 1079 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 RINLQ6ZS11 566 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 LYSMD3Q7Z3D4 306 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 ISCA2Q86U28 154 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 SLC25A45Q8N413 288 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 EID2BQ96D98 161 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 CNDP1Q96KN2 507 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 LENG8Q96PV6 779 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-208ENST00000537004 MIPEPQ99797 713 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 SHCBP1LQ9BZQ2 653 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 CCDC68Q9H2F9 335 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 IL17CQ9P0M4 197 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 ZDHHC2Q9UIJ5 367 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 RPL26L1Q9UNX3 145 aaKnown RBP11.73□□□□□ -0.53
CLIP1-208ENST00000537004 HS3ST3A1Q9Y663 406 aa11.73□□□□□ -0.53
CLIP1-208ENST00000537004 FPGTO14772 594 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 PFDN6O15212 129 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 SOCS5O75159 536 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 SNUPNO95149 360 aaKnown RBP11.72□□□□□ -0.53
CLIP1-208ENST00000537004 SERPINB5P36952 375 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 PFN3P60673 137 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 ELP6Q0PNE2 266 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 RALGDSQ12967 914 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 WSCD2Q2TBF2 565 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 TMEM52BQ4KMG9 183 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 ERAP2Q6P179 960 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 KANSL1Q7Z3B3 1105 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 MARCH9Q86YJ5 346 aa11.72□□□□□ -0.53
CLIP1-208ENST00000537004 TP53I13Q8NBR0 393 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms