RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 PPP4R4Q6NUP7 873 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 SPRED2Q7Z698 418 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 NUDT8Q8WV74 236 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 POF1BQ8WVV4 589 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 SORCS1Q8WY21 1168 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 RBM38Q9H0Z9 239 aaKnown RBP13.12□□□□□ -0.31
VPS33B-202ENST00000535906 ACTL8Q9H568 366 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 ZIM2Q9NZV7 527 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 OPTCQ9UBM4 332 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 CCL27Q9Y4X3 112 aa13.12□□□□□ -0.31
VPS33B-202ENST00000535906 IGLV3-16A0A075B6K0 115 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 FFAR3O14843 346 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 GPR42O15529 346 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 AKAP10O43572 662 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 G6PDP11413 515 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 HMOX2P30519 316 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 CTNNB1P35222 781 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 CASP2P42575 452 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 NR1H2P55055 460 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 PRKCQQ04759 706 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 AP5B1Q2VPB7 878 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 TTLL9Q3SXZ7 439 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 GDPD4Q6W3E5 623 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ZBTB49Q6ZSB9 765 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 DET1Q7L5Y6 550 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 NECAB2Q7Z6G3 386 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 KIAA2013Q8IYS2 634 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 TMEM125Q96AQ2 219 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 NMD3Q96D46 503 aaKnown RBP13.11□□□□□ -0.31
VPS33B-202ENST00000535906 TRIM54Q9BYV2 358 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 RDH14Q9HBH5 336 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 HEBP1Q9NRV9 189 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 FARSBQ9NSD9 589 aaKnown RBP13.11□□□□□ -0.31
VPS33B-202ENST00000535906 KCTD5Q9NXV2 234 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ACTR3BQ9P1U1 418 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ANGPTL3Q9Y5C1 460 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 WNT6Q9Y6F9 365 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 DHRS12A0PJE2 317 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 FAM234BA2RU67 622 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 HNRNPRO43390 633 aaKnown RBP13.11□□□□□ -0.31
VPS33B-202ENST00000535906 CKMT2P17540 419 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 DDX6P26196 483 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS33B-202ENST00000535906 BMPR1AP36894 532 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 EMX2Q04743 252 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ARHGEF7Q14155 803 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 INPP5AQ14642 412 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ZNF77Q15935 545 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ARHGAP15Q53QZ3 475 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 ELMSAN1Q6PJG2 1045 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 SPPL2CQ8IUH8 684 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 SPPL3Q8TCT6 385 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 CYB5D2Q8WUJ1 264 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 PTTG2Q9NZH5 202 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 SUN2Q9UH99 717 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 LEF1Q9UJU2 399 aaPredicted RBP13.11□□□□□ -0.31
VPS33B-202ENST00000535906 CHD9Q3L8U1 2897 aa13.11□□□□□ -0.31
VPS33B-202ENST00000535906 K7EPI3 171 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 RSL1D1O76021 490 aaKnown RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 EPCAMP16422 314 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 IRS1P35568 1242 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 PRKG2Q13237 762 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 MAP7Q14244 749 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 CBX2Q14781 532 aaPredicted RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 NHSL2Q5HYW2 709 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 TBCELQ5QJ74 424 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 BORAQ6PGQ7 559 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 CYP20A1Q6UW02 462 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ZFAND4Q86XD8 727 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ZFP28Q8NHY6 868 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 UBTD2Q8WUN7 234 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 SCAMP4Q969E2 229 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ARMC5Q96C12 935 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 TMEM74Q96NL1 305 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ANKRD60Q9BZ19 345 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 INTS7Q9NVH2 962 aaKnown RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ERVW-1Q9UQF0 538 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 DMTF1Q9Y222 760 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 TTC34A8MYJ7 566 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 LOC730098B7Z3J9 87 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 WASH3PC4AMC7 463 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 SOCS2O14508 198 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ANKRD28O15084 1053 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 MTX2O75431 263 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 CBSLP0DN79 551 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 IL10P22301 178 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 PSMA4P25789 261 aaKnown RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 AOAHP28039 575 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 WEE1P30291 646 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 CBSP35520 551 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 RPIAP49247 311 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 POLR2LP62875 67 aaKnown RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 HSPA14Q0VDF9 509 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 CRY1Q16526 586 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ZXDCQ2QGD7 858 aaPredicted RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 PLA2G4EQ3MJ16 856 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 INTS11Q5TA45 600 aaKnown RBP13.1□□□□□ -0.31
VPS33B-202ENST00000535906 ZNF697Q5TEC3 545 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 AP1ARQ63HQ0 302 aa13.1□□□□□ -0.31
VPS33B-202ENST00000535906 SLC2A7Q6PXP3 512 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms