RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 F7P08709 466 aaPredicted RBP19.35■□□□□ 0.69
CPSF1-209ENST00000532725 ERVK-10P10266 1014 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 HGFP14210 728 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 CAPZBP47756 277 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 CSE1LP55060 971 aaKnown RBP19.35■□□□□ 0.69
CPSF1-209ENST00000532725 KRT33BQ14525 404 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 TRADDQ15628 312 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 FOXR1Q6PIV2 292 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 KCNMB4Q86W47 210 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 SLC22A15Q8IZD6 547 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 KIF18AQ8NI77 898 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 LRRC1Q9BTT6 524 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 LATS2Q9NRM7 1088 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 IARS2Q9NSE4 1012 aaKnown RBP19.35■□□□□ 0.69
CPSF1-209ENST00000532725 FBXO5Q9UKT4 447 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 ZMIZ1Q9ULJ6 1067 aa19.35■□□□□ 0.69
CPSF1-209ENST00000532725 H3BMM5 538 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 AGRPO00253 132 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 KPNA5O15131 536 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 CAPN5O15484 640 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 HAUS5O94927 633 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 TNFSF15O95150 251 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 APOA4P06727 396 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 PKMP14618 531 aaKnown RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 RBMS1P29558 406 aaKnown RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 SLC1A2P43004 574 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 GFERP55789 205 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 PDIA2Q13087 525 aaKnown RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 CALCOCO2Q13137 446 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 TBC1D25Q3MII6 688 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 SYTL3Q4VX76 610 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 SNAP47Q5SQN1 464 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 STEAP4Q687X5 459 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 ACVR1CQ8NER5 493 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 ART4Q93070 314 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 C9orf72Q96LT7 481 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 ZNF578Q96N58 590 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 FAM167BQ9BTA0 163 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 RAB17Q9H0T7 212 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 TFB2MQ9H5Q4 396 aaKnown RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 FBXO6Q9NRD1 293 aaPredicted RBP19.34■□□□□ 0.69
CPSF1-209ENST00000532725 GALPQ9UBC7 116 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 CHMP2BQ9UQN3 213 aa19.34■□□□□ 0.69
CPSF1-209ENST00000532725 A8MU76 341 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 CDRT15L2A8MXV6 281 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 TLX3O43711 291 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 NIPSNAP2O75323 286 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 FGF3P11487 239 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 CCL4P13236 92 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 MLLT3P42568 568 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 LEPRP48357 1165 aaKnown RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 ERVPABLB-1P60509 514 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 PRKG2Q13237 762 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 FRG1Q14331 258 aaKnown RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 FASTKD3Q14CZ7 662 aaKnown RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 PLCL1Q15111 1095 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 ST3GAL2Q16842 350 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 ZNF549Q6P9A3 640 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 KLHL35Q6PF15 583 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 OTOAQ7RTW8 1153 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 ANKMY2Q8IV38 441 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 CNTN4Q8IWV2 1026 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 MMGT1Q8N4V1 131 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 C2CD4AQ8NCU7 369 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 AGBL5Q8NDL9 886 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 OR4E2Q8NGC2 313 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 FGF11Q92914 225 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 CFAP36Q96G28 342 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 TGM7Q96PF1 710 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 NRTNQ99748 197 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 HRASLS2Q9NWW9 162 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 AKAP7Q9P0M2 348 aaPredicted RBP19.33■□□□□ 0.68
CPSF1-209ENST00000532725 KLHL3Q9UH77 587 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 ASF1AQ9Y294 204 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 USP24Q9UPU5 2620 aa19.33■□□□□ 0.68
CPSF1-209ENST00000532725 ANKRD11Q6UB99 2663 aaPredicted RBP19.32■□□□□ 0.68
CPSF1-209ENST00000532725 OR5K3A6NET4 321 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 TOX3O15405 576 aaPredicted RBP19.32■□□□□ 0.68
CPSF1-209ENST00000532725 ITGA2BP08514 1039 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 JMJD7P0C870 316 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 TPBGLP0DKB5 382 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 ITIH1P19827 911 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 CHRM3P20309 590 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 GABRB3P28472 473 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 CSTF2P33240 577 aaKnown RBP eCLIP19.32■□□□□ 0.68
CPSF1-209ENST00000532725 ETV5P41161 510 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 PLTPP55058 493 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 MPP1Q00013 466 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 SLC7A5Q01650 507 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 ABRQ12979 859 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 PLEKHS1Q5SXH7 462 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 TEDDM1Q5T9Z0 273 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 TRMT10BQ6PF06 316 aaKnown RBP19.32■□□□□ 0.68
CPSF1-209ENST00000532725 CNSTQ6PJW8 725 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 TBC1D21Q8IYX1 336 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 FBXO36Q8NEA4 188 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 OR52E1Q8NGJ3 308 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 OR5AR1Q8NGP9 310 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 LCN9Q8WX39 176 aa19.32■□□□□ 0.68
CPSF1-209ENST00000532725 SEC14L1Q92503 715 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms