RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 GSAPA4D1B5 854 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 ARGFXA6NJG6 315 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 TMEM150CB9EJG8 249 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 H7C0S8 307 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 BTN3A3O00478 584 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 BTN3A1O00481 513 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 KCNN4O15554 427 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 LDB2O43679 373 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 STK10O94804 968 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 SORBS2O94875 1100 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 ST6GAL1P15907 406 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 PRDX3P30048 256 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 PTGIRP43119 386 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 CD151P48509 253 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 EIF3EP60228 445 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 CHAF1BQ13112 559 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 GPR33Q49SQ1 333 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 FAM198BQ6UWH4 519 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 ENDOVQ8N8Q3 282 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 GALNT11Q8NCW6 608 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 OR1L3Q8NH93 324 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 CCDC110Q8TBZ0 833 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 CALR3Q96L12 384 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 TBL1YQ9BQ87 522 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 OSBPL8Q9BZF1 889 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 TFB2MQ9H5Q4 396 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 FAM96AQ9H5X1 160 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 VPS37BQ9H9H4 285 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 PCMTD2Q9NV79 361 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 ZDHHC3Q9NYG2 299 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 TCFL5Q9UL49 500 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 SNX7Q9UNH6 387 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 PCDHGB7Q9Y5F8 929 aa11.02□□□□□ -0.65
VPS28-214ENST00000531032 SPTAN1Q13813 2472 aaKnown RBP11.02□□□□□ -0.65
VPS28-214ENST00000531032 TTLL8A6PVC2 850 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 IFRD1O00458 451 aaPredicted RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 CCL22O00626 93 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 DDX3YO15523 660 aaKnown RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 VPS4BO75351 444 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 TMEM63AO94886 807 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 CAPN1P07384 714 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 GSTM1P09488 218 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 CYP2A7P20853 494 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 CTNNA2P26232 953 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 ACRV1P26436 265 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 PDHA2P29803 388 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 MC4RP32245 332 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 UQCRFS1P47985 274 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 PREPP48147 710 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 CDKN1CP49918 316 aaPredicted RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 CCL11P51671 97 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 ZNF75DP51815 510 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 TMPRSS15P98073 1019 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 GSTM4Q03013 218 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 RPA4Q13156 261 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 NADK2Q4G0N4 442 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 KCTD11Q693B1 232 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 DARS2Q6PI48 645 aaKnown RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 SYTL1Q8IYJ3 562 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 EFCAB3Q8N7B9 438 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 OR52E1Q8NGJ3 308 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 CPT1CQ8TCG5 803 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 CLIP3Q96DZ5 547 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 DNAJC1Q96KC8 554 aaKnown RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 TRAPPC9Q96Q05 1148 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 FERD3LQ96RJ6 166 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 FAM118BQ9BPY3 351 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 DPH2Q9BQC3 489 aaPredicted RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 MVB12BQ9H7P6 319 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 ACTR5Q9H9F9 607 aaPredicted RBP11.01□□□□□ -0.65
VPS28-214ENST00000531032 VPS4AQ9UN37 437 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 ZNF451Q9Y4E5 1061 aa11.01□□□□□ -0.65
VPS28-214ENST00000531032 PIKFYVEQ9Y2I7 2098 aa11□□□□□ -0.65
VPS28-214ENST00000531032 UTP20O75691 2785 aaKnown RBP11□□□□□ -0.65
VPS28-214ENST00000531032 SHANK1Q9Y566 2161 aa11□□□□□ -0.65
VPS28-214ENST00000531032 PCSK5Q92824 1860 aa11□□□□□ -0.65
VPS28-214ENST00000531032 BLACEA4D250 179 aa11□□□□□ -0.65
VPS28-214ENST00000531032 RCCD1A6NED2 376 aa11□□□□□ -0.65
VPS28-214ENST00000531032 C2orf74A8MZ97 194 aa11□□□□□ -0.65
VPS28-214ENST00000531032 ZNF189O75820 626 aaPredicted RBP11□□□□□ -0.65
VPS28-214ENST00000531032 TJP3O95049 919 aa11□□□□□ -0.65
VPS28-214ENST00000531032 LMAN1P49257 510 aa11□□□□□ -0.65
VPS28-214ENST00000531032 VAV2P52735 878 aa11□□□□□ -0.65
VPS28-214ENST00000531032 NAP1L1P55209 391 aaKnown RBP11□□□□□ -0.65
VPS28-214ENST00000531032 ITGA1P56199 1179 aa11□□□□□ -0.65
VPS28-214ENST00000531032 RWDD2BP57060 319 aa11□□□□□ -0.65
VPS28-214ENST00000531032 BOP1Q14137 746 aaKnown RBP11□□□□□ -0.65
VPS28-214ENST00000531032 SPARCL1Q14515 664 aa11□□□□□ -0.65
VPS28-214ENST00000531032 NCF4Q15080 339 aa11□□□□□ -0.65
VPS28-214ENST00000531032 FAM69BQ5VUD6 431 aa11□□□□□ -0.65
VPS28-214ENST00000531032 ZNF385CQ66K41 422 aaPredicted RBP11□□□□□ -0.65
VPS28-214ENST00000531032 MICALCLQ6ZW33 695 aa11□□□□□ -0.65
VPS28-214ENST00000531032 MED25Q71SY5 747 aa11□□□□□ -0.65
VPS28-214ENST00000531032 SERPINA9Q86WD7 417 aa11□□□□□ -0.65
VPS28-214ENST00000531032 AMIGO1Q86WK6 493 aa11□□□□□ -0.65
VPS28-214ENST00000531032 ADGRF3Q8IZF5 1079 aa11□□□□□ -0.65
VPS28-214ENST00000531032 ZBTB2Q8N680 514 aa11□□□□□ -0.65
VPS28-214ENST00000531032 TMEM102Q8N9M5 508 aaPredicted RBP11□□□□□ -0.65
VPS28-214ENST00000531032 PHC3Q8NDX5 983 aa11□□□□□ -0.65
VPS28-214ENST00000531032 ALG3Q92685 438 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms