RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 PDLIM1O00151 329 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 PER2O15055 1255 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 IFNW1P05000 195 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 SPATA31D3P0C874 917 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 MTHFD1P11586 935 aaKnown RBP13.6□□□□□ -0.23
SYNPO-205ENST00000522122 SEPHS1P49903 392 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 FAM46CQ5VWP2 391 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 FAM92BQ6ZTR7 304 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 SPATA31D4Q6ZUB0 917 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 IKBIPQ70UQ0 350 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 FIBCD1Q8N539 461 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 NAT16Q8N8M0 369 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 TMEM209Q96SK2 561 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 MCMBPQ9BTE3 642 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 C3orf14Q9HBI5 128 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 GULP1Q9UBP9 304 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 NDOR1Q9UHB4 597 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 FADS2P1A8MWK0 482 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 TFECO14948 347 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-205ENST00000522122 MYLK3Q32MK0 819 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 HID1Q8IV36 788 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 TTC29Q8NA56 475 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-205ENST00000522122 OR52J3Q8NH60 311 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 VANGL1Q8TAA9 524 aaPredicted RBP13.6□□□□□ -0.23
SYNPO-205ENST00000522122 NPY6RQ99463 290 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 SORT1Q99523 831 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 TNKS2Q9H2K2 1166 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 INTS7Q9NVH2 962 aaKnown RBP13.6□□□□□ -0.23
SYNPO-205ENST00000522122 OAZ3Q9UMX2 235 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 FCF1Q9Y324 198 aaKnown RBP13.6□□□□□ -0.23
SYNPO-205ENST00000522122 FAM47E-STBD1D6RA91 191 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 SELPP16109 830 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 DDI2Q5TDH0 399 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 VMP1Q96GC9 406 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 GDAP2Q9NXN4 497 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 GPSM3Q9Y4H4 160 aa13.6□□□□□ -0.23
SYNPO-205ENST00000522122 SAGE2PA6NJ88 616 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 MAGEB17A8MXT2 336 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 NDUFS2O75306 463 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 RCVRNP35243 200 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 NSG1P42857 185 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 TAS2R41P59536 307 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 SRSF11Q05519 484 aaKnown RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 PIGGQ5H8A4 983 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 C9orf64Q5T6V5 341 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 UTS2BQ765I0 119 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 AKAP14Q86UN6 197 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 FEM1AQ9BSK4 669 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 OR2AG2A6NM03 316 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 hCG_2039718K7EN88 272 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CXCL14O95715 111 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 MYL9P24844 172 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CCT3P49368 545 aaKnown RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 PTPN5P54829 565 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 MLLT6P55198 1093 aaPredicted RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 DAG1Q14118 895 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 TEPSINQ96N21 525 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 SLC39A3Q9BRY0 314 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 ZNF780BQ9Y6R6 833 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 IRGMA1A4Y4 181 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 K7EPI3 171 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CASKO14936 926 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 AIREO43918 545 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 EDN1P05305 212 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CCR10P46092 362 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 ZNF33AQ06730 810 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CBX2Q14781 532 aaPredicted RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 PLET1Q6UQ28 207 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 NAPRTQ6XQN6 538 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 POMGNT2Q8NAT1 580 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 DNAJB8Q8NHS0 232 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 AP2M1Q96CW1 435 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 FERD3LQ96RJ6 166 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 POLR1DQ9Y2S0 133 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 COL5A3P25940 1745 aaPredicted RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 IGKV6-21A0A0C4DH24 114 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 ARPC2O15144 300 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 TP73O15350 636 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 EOMESO95936 686 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 PRKAR1AP10644 381 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 RGS1Q08116 209 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CBX3Q13185 183 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 C11orf91Q3C1V1 193 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 MED27Q6P2C8 311 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 UGT2A3Q6UWM9 527 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CXXC5Q7LFL8 322 aaKnown RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 CDH24Q86UP0 819 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 GPR65Q8IYL9 337 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 SEMA3GQ9NS98 782 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 POLR3BQ9NW08 1133 aaPredicted RBP13.59□□□□□ -0.23
SYNPO-205ENST00000522122 FNIP2Q9P278 1114 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 SLC2A6Q9UGQ3 507 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 EMCNQ9ULC0 261 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 MAP4K5Q9Y4K4 846 aa13.59□□□□□ -0.23
SYNPO-205ENST00000522122 FFAR2O15552 330 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 HTRA2O43464 458 aaPredicted RBP13.58□□□□□ -0.23
SYNPO-205ENST00000522122 NIPSNAP2O75323 286 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 POP4O95707 220 aaKnown RBP13.58□□□□□ -0.23
SYNPO-205ENST00000522122 TBX18O95935 607 aa13.58□□□□□ -0.23
SYNPO-205ENST00000522122 RPL4P36578 427 aaKnown RBP13.58□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms