RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TEFMQ96QE5 360 aaKnown RBP12.48□□□□□ -0.41
USP53-209ENST00000514665 C16orf70Q9BSU1 422 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 SMOC2Q9H3U7 446 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 VRTNQ9H8Y1 702 aa12.48□□□□□ -0.41
USP53-209ENST00000514665 MYO10Q9HD67 2058 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 RGPD1P0DJD0 1748 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 IFNW1P05000 195 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 CBX2Q14781 532 aaPredicted RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 TAB1Q15750 504 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 ZBTB6Q15916 424 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 CILP2Q8IUL8 1156 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 ENDOVQ8N8Q3 282 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 PNPLA1Q8N8W4 532 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 TRPV3Q8NET8 790 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 ST13P5Q8NFI4 369 aaPredicted RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 AUTS2Q8WXX7 1259 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 POP5Q969H6 163 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 SYT11Q9BT88 431 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 NSUN3Q9H649 340 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 MOCS1Q9NZB8 636 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 MAP10Q9P2G4 905 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 DNAJB9Q9UBS3 223 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 COL14A1Q05707 1796 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 SAP18O00422 153 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 HAT1O14929 419 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 OR10H2O60403 315 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 RPL4P36578 427 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 GUCA1AP43080 201 aaPredicted RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 MTTPP55157 894 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 BIKQ13323 160 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 SYT16Q17RD7 645 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 TXNDC8Q6A555 127 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 ZNF554Q86TJ5 538 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 PDSS2Q86YH6 399 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 EXD2Q9NVH0 621 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 MRPL39Q9NYK5 338 aaKnown RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 OR10H1Q9Y4A9 318 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 GSAPA4D1B5 854 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 AIREO43918 545 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 UGT2B17O75795 530 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 BCAS2O75934 225 aaPredicted RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 ACLYP53396 1101 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 OLR1P78380 273 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 MXD1Q05195 221 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 ELP6Q0PNE2 266 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 GCNT6Q5T4J0 391 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 ARMC3Q5W041 872 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 KLHDC10Q6PID8 442 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 B3GNT9Q6UX72 402 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 CYP2U1Q7Z449 544 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 GLB1L3Q8NCI6 653 aaPredicted RBP12.47□□□□□ -0.41
USP53-209ENST00000514665 AIF1LQ9BQI0 150 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 CMTM6Q9NX76 183 aa12.47□□□□□ -0.41
USP53-209ENST00000514665 SCN11AQ9UI33 1791 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 LRP6O75581 1613 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 ANKRD66B4E2M5 251 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 CLDN25C9JDP6 229 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 TPST2O60704 377 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 PGLSO95336 258 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 GNAZP19086 355 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 FMO3P31513 532 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 TAS2R41P59536 307 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 BNIP3Q12983 259 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 TRIM71Q2Q1W2 868 aaKnown RBP12.46□□□□□ -0.41
USP53-209ENST00000514665 MS4A13Q5J8X5 152 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 MED27Q6P2C8 311 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.46□□□□□ -0.41
USP53-209ENST00000514665 SPACA7Q96KW9 195 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 SEMA3GQ9NS98 782 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 ZNF142P52746 1687 aaPredicted RBP12.46□□□□□ -0.41
USP53-209ENST00000514665 A0A0G2JN53 185 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 CCDC182A6NF36 153 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 NDUFS2O75306 463 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 DIRAS1O95057 198 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 FGBP02675 491 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 MAPK12P53778 367 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 EEFSECP57772 596 aaKnown RBP12.46□□□□□ -0.41
USP53-209ENST00000514665 HSPB3Q12988 150 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 CHRNA6Q15825 494 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 SNAPC1Q16533 368 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 MZT2BQ6NZ67 158 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 DNAJB7Q7Z6W7 309 aaPredicted RBP12.46□□□□□ -0.41
USP53-209ENST00000514665 HM13Q8TCT9 377 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 ANKRD49Q8WVL7 239 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 TMBIM1Q969X1 311 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 RAD51AP1Q96B01 352 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 ZNF510Q9Y2H8 683 aa12.46□□□□□ -0.41
USP53-209ENST00000514665 TMA7Q9Y2S6 64 aaKnown RBP12.46□□□□□ -0.41
USP53-209ENST00000514665 CHD2O14647 1828 aaKnown RBP12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3DA0A087WVF3 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3IA0A087WXS9 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3EA0A087X179 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3KA0A087X1G2 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3FA6NER0 549 aaPredicted RBP12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3LB9A6J9 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 CASKO14936 926 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 TBC1D3HP0C7X1 549 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 G6PDP11413 515 aa12.46□□□□□ -0.42
USP53-209ENST00000514665 GTF2E2P29084 291 aaKnown RBP12.46□□□□□ -0.42
USP53-209ENST00000514665 NFKB2Q00653 900 aa12.46□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms