RNA–Protein interactions for RNA: ENST00000513284.5

RNF4-218, Transcript of ring finger protein 4, human

TSL 4

Gene RNF4, Length 517 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-218	ENST00000513284	COG1	Q8WTW3	980 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	NAT14	Q8WUY8	206 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	NR4A3	Q92570	626 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	FATE1	Q969F0	183 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	AGAP4	Q96P64	663 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	MESP1	Q9BRJ9	268 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	PITPNM3	Q9BZ71	974 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	WWP1	Q9H0M0	922 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	KIR3DX1	Q9H7L2	352 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A7	Q9HAW7	530 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A10	Q9HAW8	530 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	UGT1A8	Q9HAW9	530 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	FANCE	Q9HB96	536 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	MCCC2	Q9HCC0	563 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	MAGEE1	Q9HCI5	957 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	BPIFA1	Q9NP55	256 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	AIPL1	Q9NZN9	384 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	MYO1A	Q9UBC5	1043 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	DHCR7	Q9UBM7	475 aa	Known RBP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	AMACR	Q9UHK6	382 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	FBXL4	Q9UKA2	621 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	TTLL3	Q9Y4R7	772 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	SPO11	Q9Y5K1	396 aa		10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	PRRC2A	P48634	2157 aa	Known RBP	10.82	□□□□□ -0.68
RNF4-218	ENST00000513284	CCDC66	A2RUB6	948 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	GPR39	O43194	453 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	HBQ1	P09105	142 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	ITGAX	P20702	1163 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	CCNC	P24863	283 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	DCD	P81605	110 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	TLE4	Q04727	773 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	TYRO3	Q06418	890 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	SLC10A2	Q12908	348 aa	Predicted RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	XRCC4	Q13426	336 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	KRT81	Q14533	505 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	ZIC1	Q15915	447 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	HADH	Q16836	314 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	TIGD7	Q6NT04	549 aa	Predicted RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	RHBDD2	Q6NTF9	364 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	ARMC6	Q6NXE6	501 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	KIRREL2	Q6UWL6	708 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	TMEM207	Q6UWW9	146 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	GFRAL	Q6UXV0	394 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	RPTN	Q6XPR3	784 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	LINC00696	Q6ZRV3	163 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	BEND7	Q8N7W2	519 aa	Predicted RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	OR1N1	Q8NGS0	311 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	HDAC11	Q96DB2	347 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	MTFMT	Q96DP5	389 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	C12orf66	Q96MD2	445 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	BPIFA3	Q9BQP9	254 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	IL26	Q9NPH9	171 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	RTN4	Q9NQC3	1192 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	IFT80	Q9P2H3	777 aa	Predicted RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	SUCO	Q9UBS9	1254 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	ZNF711	Q9Y462	761 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	BZW2	Q9Y6E2	419 aa	Known RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	ACAN	P16112	2415 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	NUP210L	Q5VU65	1888 aa		10.81	□□□□□ -0.68
RNF4-218	ENST00000513284	OR2AG2	A6NM03	316 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	BTN3A1	O00481	513 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	UNC5C	O95185	931 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	SLC4A1	P02730	911 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	CD99	P14209	185 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	CD1E	P15812	388 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	MMP11	P24347	488 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	ARSE	P51690	589 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	PAFAH1B3	Q15102	231 aa	Known RBP	10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	CYP2A13	Q16696	494 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	NKAIN1	Q4KMZ8	207 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	CCDC122	Q5T0U0	273 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	NCBP2-AS2	Q69YL0	99 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	ZNF571	Q7Z3V5	609 aa	Predicted RBP	10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	LILRA3	Q8N6C8	439 aa	Predicted RBP	10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	FAM71B	Q8TC56	605 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	BRSK1	Q8TDC3	778 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	TEKT4	Q8WW24	435 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	TADA1	Q96BN2	335 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	RMDN2	Q96LZ7	410 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	LMF1	Q96S06	567 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	SPOCK3	Q9BQ16	436 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	TMEM121	Q9BTD3	319 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	ADGRE3	Q9BY15	652 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	GPR63	Q9BZJ6	419 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	SLC7A5P2	Q9GIP4	190 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	ENKD1	Q9H0I2	346 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	GSX1	Q9H4S2	264 aa	Predicted RBP	10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	RAD18	Q9NS91	495 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	SEMA3G	Q9NS98	782 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	IP6K2	Q9UHH9	426 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	GPN3	Q9UHW5	284 aa	Predicted RBP	10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	HS3ST3B1	Q9Y662	390 aa		10.8	□□□□□ -0.68
RNF4-218	ENST00000513284	DDX3X	O00571	662 aa	Known RBP eCLIP	10.79	□□□□□ -0.68	2e-8	■■■□□ 17.9
RNF4-218	ENST00000513284	SGTA	O43765	313 aa		10.79	□□□□□ -0.68
RNF4-218	ENST00000513284	SERPINC1	P01008	464 aa		10.79	□□□□□ -0.68
RNF4-218	ENST00000513284	HLA-DPA1	P20036	260 aa		10.79	□□□□□ -0.68
RNF4-218	ENST00000513284	AGA	P20933	346 aa		10.79	□□□□□ -0.68
RNF4-218	ENST00000513284	ART1	P52961	327 aa		10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms