RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 LAIR2Q6ISS4 152 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CCDC81Q6ZN84 652 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 NECAB2Q7Z6G3 386 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 RTN4RL1Q86UN2 441 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 FUBP3Q96I24 572 aaKnown RBP eCLIP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 UROC1Q96N76 676 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 NODALQ96S42 347 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CIPCQ9C0C6 399 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC25A37Q9NYZ2 338 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PAIP2BQ9ULR5 123 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 Q9Y3F1 56 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 TRIM64BA6NI03 449 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ARNTLO00327 626 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PFDN6O15212 129 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PRSS23O95084 383 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CELF2O95319 508 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PFKLP17858 780 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 CDH3P22223 829 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 GSTM2P28161 218 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 SGSHP51688 502 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 GTF2H3Q13889 308 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 DGCR6Q14129 220 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 FXNQ16595 210 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 DET1Q7L5Y6 550 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 SLC22A15Q8IZD6 547 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 LIX1Q8N485 282 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 HDAC2Q92769 488 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 NEURL2Q9BR09 285 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 BOCQ9BWV1 1114 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 GPR63Q9BZJ6 419 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 GPR62Q9BZJ7 368 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PAK1IP1Q9NWT1 392 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 HCSTQ9UBK5 93 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ERGIC3Q9Y282 383 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 LOC100130705A0A1B0GUX0 176 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 TMEM247A6NEH6 219 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ADAM23O75077 832 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 GJB5O95377 273 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 NPPAP01160 153 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 S100BP04271 92 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ASGR1P07306 291 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 RHOCP08134 193 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ALPIP09923 528 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 IRF1P10914 325 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 MYCLP1P12525 358 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 DCTP40126 519 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 BTG3Q14201 252 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 PON2Q15165 354 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 RBM48Q5RL73 367 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 RSPO2Q6UXX9 243 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 MSRB3Q8IXL7 192 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 ZNF548Q8NEK5 533 aaPredicted RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 KCNJ9Q92806 393 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 OR52E6Q96RD3 313 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 BARD1Q99728 777 aaKnown RBP9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 DAPK2Q9UIK4 370 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 RIMKLBQ9ULI2 386 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 NEUROG3Q9Y4Z2 214 aa9.09□□□□□ -0.95
LIMCH1-215ENST00000512632 TANC1Q9C0D5 1861 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ACSL4O60488 711 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SERPINB7O75635 380 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 DIRAS1O95057 198 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PGRP06401 933 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FMO3P31513 532 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CA5AP35218 305 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PPP2R2BQ00005 443 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SEMG2Q02383 582 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 OCA2Q04671 838 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 TRIM32Q13049 653 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CLLU1OSQ5K130 101 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FAM151BQ6UXP7 276 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ZNF598Q86UK7 904 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CHPT1Q8WUD6 406 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FKBP10Q96AY3 582 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 MAGEH1Q9H213 219 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 GNPTGQ9UJJ9 305 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 EIF3LQ9Y262 564 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PKP3Q9Y446 797 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PRMT5O14744 637 aaPredicted RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SERPINA1P01009 418 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CLCN7P51798 805 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FPGSQ05932 587 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 TRAF3Q13114 568 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 CPSF6Q16630 551 aaKnown RBP eCLIP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 PHKG1Q16816 387 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SBSNQ6UWP8 590 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 MBOAT1Q6ZNC8 495 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 GALNT10Q86SR1 603 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 NETO1Q8TDF5 533 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SPC25Q9HBM1 224 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 INIPQ9NRY2 104 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 OLA1Q9NTK5 396 aaKnown RBP9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ELOVL2Q9NXB9 296 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 FAM92AA1XBS5 289 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 SLC1A7O00341 560 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 OTCP00480 354 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 MAP2K4P45985 399 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 ISL1P61371 349 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 KIAA0040Q15053 153 aa9.08□□□□□ -0.96
LIMCH1-215ENST00000512632 RNF19BQ6ZMZ0 732 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms