RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CNKSR3Q6P9H4 555 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 FAM92BQ6ZTR7 304 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 KCTD8Q6ZWB6 473 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF461Q8TAF7 563 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 OLFM1Q99784 485 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 EBPLQ9BY08 206 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 EPB41L1Q9H4G0 881 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 FANCEQ9HB96 536 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TUBA8Q9NY65 449 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 GABRQQ9UN88 632 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 PDE10AQ9Y233 779 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TMED5Q9Y3A6 229 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 RGS10O43665 173 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 DYRK3O43781 588 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CBFA2T3O75081 653 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CCNDBP1O95273 360 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 NFATC1O95644 943 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TLX1P31314 330 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 MANFP55145 182 aaKnown RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CAP1Q01518 475 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 DAG1Q14118 895 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TGFBIQ15582 683 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 PPP1R3AQ16821 1122 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 KREMEN2Q8NCW0 462 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 TRPV3Q8NET8 790 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 L3HYPDHQ96EM0 354 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 KCNA7Q96RP8 456 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF382Q96SR6 550 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 CCDC177Q9NQR7 707 aaPredicted RBP10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 OAZ3Q9UMX2 235 aa10.58□□□□□ -0.72
LIMCH1-205ENST00000503057 LOC100506127A0A0U1RQW1 187 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 CYBAP13498 195 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ALOX12P18054 663 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PAICSP22234 425 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PTX3P26022 381 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 AP1S2P56377 157 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 MAPK11Q15759 364 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 UNC50Q53HI1 259 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 RD3Q7Z3Z2 195 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ANKRD46Q86W74 232 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ZDHHC21Q8IVQ6 265 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PHC3Q8NDX5 983 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 C19orf18Q8NEA5 215 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF778Q96MU6 729 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 NUAK2Q9H093 628 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 MEIS3P2A8K0S8 358 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ADAMDEC1O15204 470 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ANGPTL1O95841 491 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 EBLN1P0CF75 366 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 CKMT2P17540 419 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 UGT1A6P19224 532 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PRPS1L1P21108 318 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 UGT1A1P22309 533 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 UGT1A4P22310 534 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 UGT1A3P35503 534 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 UGT1A5P35504 534 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 OLR1P78380 273 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PRKCQQ04759 706 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PTPRCAPQ14761 206 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 FAM81AQ8TBF8 368 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 MS4A4AQ96JQ5 239 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 DEC1Q9P2X7 70 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 GULP1Q9UBP9 304 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ERGIC3Q9Y282 383 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 RWDD3Q9Y3V2 267 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 COCHO43405 550 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 LY75O60449 1722 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PENKP01210 267 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 DDX6P26196 483 aaKnown RBP eCLIP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 CDKN2DP55273 166 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 C2orf80Q0P641 193 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 NADK2Q4G0N4 442 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 RFTN2Q52LD8 501 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 RBM48Q5RL73 367 aaKnown RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 RANBP10Q6VN20 620 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 GDPD4Q6W3E5 623 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 BEND7Q8N7W2 519 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 SORT1Q99523 831 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 CSNK1G1Q9HCP0 422 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 TMLHEQ9NVH6 421 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF282Q9UDV7 671 aaPredicted RBP10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ADAMTS6Q9UKP5 1117 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ZNF232Q9UNY5 417 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 HAS3O00219 553 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 TNFRSF11BO00300 401 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ASNA1O43681 348 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 OR10H3O60404 316 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 CLTBP09497 229 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 JAK1P23458 1154 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PRKAG1P54619 331 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 ECT2LQ008S8 904 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 GPAT3Q53EU6 434 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 PDZK1Q5T2W1 519 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 SLC2A7Q6PXP3 512 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 TRIB3Q96RU7 358 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 FNDC11Q9BVV2 318 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 MAGEE1Q9HCI5 957 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 IGSF5Q9NSI5 407 aa10.57□□□□□ -0.72
LIMCH1-205ENST00000503057 GPSM3Q9Y4H4 160 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms