RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 AGPSO00116 658 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 KCNK1O00180 336 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 ALOX12BO75342 701 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 ATXN8OSP0DMR3 200 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 GZMAP12544 262 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 PVRP15151 417 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 PBLDP30039 288 aaPredicted RBP15.94■□□□□ 0.14
VIM-208ENST00000497849 GBE1Q04446 702 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 SLC10A2Q12908 348 aaPredicted RBP15.94■□□□□ 0.14
VIM-208ENST00000497849 DPYSL3Q14195 570 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 CYP2A13Q16696 494 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 ZFYVE27Q5T4F4 411 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 FAM180AQ6UWF9 173 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 ZNF808Q8N4W9 903 aaPredicted RBP15.94■□□□□ 0.14
VIM-208ENST00000497849 BEND7Q8N7W2 519 aaPredicted RBP15.94■□□□□ 0.14
VIM-208ENST00000497849 MRPL47Q9HD33 250 aaKnown RBP15.94■□□□□ 0.14
VIM-208ENST00000497849 SLC6A20Q9NP91 592 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 IL26Q9NPH9 171 aa15.94■□□□□ 0.14
VIM-208ENST00000497849 GPN3Q9UHW5 284 aaPredicted RBP15.94■□□□□ 0.14
VIM-208ENST00000497849 CCDC66A2RUB6 948 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 GSAPA4D1B5 854 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 MATN2O00339 956 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 BTN3A3O00478 584 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 PCDH17O14917 1159 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 HCRTR1O43613 425 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A9O60656 530 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A6P19224 532 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A1P22309 533 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A4P22310 534 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 PIGHQ14442 188 aaPredicted RBP15.93■□□□□ 0.14
VIM-208ENST00000497849 SLC9A5Q14940 896 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 TLR1Q15399 786 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 PCSK7Q16549 785 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 AGAP7PQ5VUJ5 663 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 PRAMEF13Q5VWM6 474 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 FCRL6Q6DN72 434 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 RHBDD2Q6NTF9 364 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 VSTM4Q8IW00 320 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 BCORP1Q8N888 145 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 DDHD1Q8NEL9 900 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 TADA1Q96BN2 335 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 HDAC11Q96DB2 347 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 IMP4Q96G21 291 aaKnown RBP15.93■□□□□ 0.14
VIM-208ENST00000497849 BTBD6Q96KE9 485 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 RMDN2Q96LZ7 410 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 AGAP4Q96P64 663 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A7Q9HAW7 530 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A10Q9HAW8 530 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 UGT1A8Q9HAW9 530 aa15.93■□□□□ 0.14
VIM-208ENST00000497849 ANKHD1Q8IWZ3 2542 aaKnown RBP15.93■□□□□ 0.14
VIM-208ENST00000497849 DDX3XO00571 662 aaKnown RBP eCLIP15.92■□□□□ 0.148e-32■■■□□ 14.7
VIM-208ENST00000497849 PRICKLE3O43900 615 aaPredicted RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 TPM3P06753 285 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 CD63P08962 238 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 HMGCLP35914 325 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 IFI35P80217 286 aaPredicted RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 DCDP81605 110 aaKnown RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 ATP13A4Q4VNC1 1196 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 VWA2Q5GFL6 755 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 RPUSD3Q6P087 351 aaKnown RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 ZNF571Q7Z3V5 609 aaPredicted RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 NIPA2Q8N8Q9 360 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 CCNYQ8ND76 341 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 CATSPER1Q8NEC5 780 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 DTX3LQ8TDB6 740 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 NAT14Q8WUY8 206 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 TRIM56Q9BRZ2 755 aaKnown RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 CEP41Q9BYV8 373 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 ZCCHC2Q9C0B9 1178 aaKnown RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 SPRTNQ9H040 489 aaPredicted RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 HAUS4Q9H6D7 363 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 FAM60AQ9NP50 221 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 IFT80Q9P2H3 777 aaPredicted RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 DHCR7Q9UBM7 475 aaKnown RBP15.92■□□□□ 0.14
VIM-208ENST00000497849 NDOR1Q9UHB4 597 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 FBXL4Q9UKA2 621 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 ACSL5Q9ULC5 683 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 ABCA2Q9BZC7 2435 aa15.92■□□□□ 0.14
VIM-208ENST00000497849 NCOA6Q14686 2063 aaPredicted RBP15.91■□□□□ 0.14
VIM-208ENST00000497849 CACNA1CQ13936 2221 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 MGAT4DA6NG13 374 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 BTN3A1O00481 513 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 CTSBP07858 339 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 MX2P20592 715 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 NDUFS1P28331 727 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 GABRA4P48169 554 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 PRKD1Q15139 912 aaPredicted RBP15.91■□□□□ 0.14
VIM-208ENST00000497849 LDLRAP1Q5SW96 308 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 FNBP1LQ5T0N5 605 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 GPRC6AQ5T6X5 926 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 GPR135Q8IZ08 494 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 LILRA3Q8N6C8 439 aaPredicted RBP15.91■□□□□ 0.14
VIM-208ENST00000497849 PQLC3Q8N755 202 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 PROKR1Q8TCW9 393 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 TAAR6Q96RI8 345 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 SRMSQ9H3Y6 488 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 SLC22A11Q9NSA0 550 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 SUCOQ9UBS9 1254 aaKnown RBP15.91■□□□□ 0.14
VIM-208ENST00000497849 FAM8A1Q9UBU6 413 aa15.91■□□□□ 0.14
VIM-208ENST00000497849 AP1M2Q9Y6Q5 423 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms