RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 PCTPQ9UKL6 214 aa13.21□□□□□ -0.3
GPC1-209ENST00000495100 SH3GLB1Q9Y371 365 aa13.21□□□□□ -0.3
GPC1-209ENST00000495100 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.21□□□□□ -0.3
GPC1-209ENST00000495100 MYOFQ9NZM1 2061 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 A0A1B0GVM2 712 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 H3BNH8 94 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 PEX11BO96011 259 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 CD247P20963 164 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 MAP2K4P45985 399 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 DNAJB13P59910 316 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 ATP6V0D1P61421 351 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 ERVK-8P63133 956 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 UBE3AQ05086 875 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 XKR6Q5GH73 641 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 PAGE2BQ5JRK9 111 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 ADGRF1Q5T601 910 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 RETSATQ6NUM9 610 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 CLIP4Q8N3C7 705 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 DDHD1Q8NEL9 900 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 CD200R1Q8TD46 325 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 ISOC1Q96CN7 298 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 YME1L1Q96TA2 773 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 TFB2MQ9H5Q4 396 aaKnown RBP13.2□□□□□ -0.3
GPC1-209ENST00000495100 FAM124BQ9H5Z6 455 aaPredicted RBP13.2□□□□□ -0.3
GPC1-209ENST00000495100 TMEM181Q9P2C4 612 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 SMIM30A4D0T7 59 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 LCHNA4D1U4 455 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 DENRO43583 198 aaKnown RBP13.2□□□□□ -0.3
GPC1-209ENST00000495100 ZNF623O75123 536 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 STK16O75716 305 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 CYBAP13498 195 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 TACR1P25103 407 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 GNPDA1P46926 289 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 OR1E2P47887 323 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 NAE1Q13564 534 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 HEATR4Q86WZ0 1026 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 EPHX4Q8IUS5 362 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 ADGRG5Q8IZF4 528 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 PROKR1Q8TCW9 393 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 OSCP1Q8WVF1 389 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 MRPS31Q92665 395 aaKnown RBP13.2□□□□□ -0.3
GPC1-209ENST00000495100 SH3KBP1Q96B97 665 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 CAPN10Q9HC96 672 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 SELENONQ9NZV5 590 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 LSM7Q9UK45 103 aaKnown RBP13.2□□□□□ -0.3
GPC1-209ENST00000495100 SLC8A2Q9UPR5 921 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 ZFC3H1O60293 1989 aaKnown RBP13.2□□□□□ -0.3
GPC1-209ENST00000495100 DOCK6Q96HP0 2047 aa13.2□□□□□ -0.3
GPC1-209ENST00000495100 TMEM88BA6NKF7 163 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 RGS14O43566 566 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 OTCP00480 354 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 THRBP10828 461 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 CA5AP35218 305 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 CLCN2P51788 898 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 TAF1AQ15573 450 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 PDE12Q6L8Q7 609 aaKnown RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 CRTC3Q6UUV7 619 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 Q6ZPB1 254 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 AHSA2Q719I0 299 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 PELI3Q8N2H9 469 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 SLC22A17Q8WUG5 538 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 PSKH2Q96QS6 385 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 MAGEH1Q9H213 219 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 ZNF225Q9UK10 706 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 SQORQ9Y6N5 450 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 PLK4O00444 970 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 IFRD1O00458 451 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 URODP06132 367 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 OCM2P0CE71 109 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 OCMP0CE72 109 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 TCF3P15923 654 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 HPCAP84074 193 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 TNK2Q07912 1038 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 HERC3Q15034 1050 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 TRIM16LQ309B1 348 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 USP41Q3LFD5 358 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 KLHL35Q6PF15 583 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 Q6ZSR9 355 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 TRMT11Q7Z4G4 463 aaKnown RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 CNTN4Q8IWV2 1026 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 ZNF540Q8NDQ6 660 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 LINC01599Q8WXQ3 324 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 IKZF5Q9H5V7 419 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 HMX1Q9NP08 348 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 CCM2LQ9NUG4 571 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 ACTR3BQ9P1U1 418 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 SAMHD1Q9Y3Z3 626 aaKnown RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 TESMINQ9Y4I5 508 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 ARIH1Q9Y4X5 557 aaPredicted RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 ZNF840PA6NDX5 716 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 LRG1P02750 347 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 INHAP05111 366 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 DBTP11182 482 aaKnown RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 HNF1BP35680 557 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 WASP42768 502 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 TUFMP49411 452 aaKnown RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 CDH4P55283 916 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 NFKB2Q00653 900 aa13.19□□□□□ -0.3
GPC1-209ENST00000495100 SMN1Q16637 294 aaKnown RBP13.19□□□□□ -0.3
GPC1-209ENST00000495100 CTSL3PQ5NE16 218 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms