RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 GARSP41250 739 aaKnown RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 KRTAP10-1P60331 282 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 MEA1Q16626 185 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 ASTE1Q2TB18 679 aaPredicted RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 GLIPR1L2Q4G1C9 344 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 RILPL1Q5EBL4 403 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 SPATA1Q5VX52 437 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 NSUN5P2Q63ZY6 315 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 Q6ZSR9 355 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 Q75L30 129 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 FASTKD5Q7L8L6 764 aaKnown RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 CCDC190Q86UF4 302 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 OR2L2Q8NH16 312 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 UTP15Q8TED0 518 aaKnown RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 FAM120BQ96EK7 910 aaKnown RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 SAT2Q96F10 170 aaPredicted RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 EGLN2Q96KS0 407 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 GAD1Q99259 594 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 C1QTNF1Q9BXJ1 281 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 KLHL9Q9P2J3 617 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 DNAJB4Q9UDY4 337 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 FBXO2Q9UK22 296 aaPredicted RBP3.33□□□□□ -1.88
VPS50-219ENST00000495039 GPR34Q9UPC5 381 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 CMAHPQ9Y471 501 aa3.33□□□□□ -1.88
VPS50-219ENST00000495039 IGHV4-4A0A075B6R2 117 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 GFPT2O94808 682 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 TPPPO94811 219 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 KCNK5O95279 499 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 KRT19P08727 400 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 FRMD6-AS1P0C7T7 363 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 ACADLP28330 430 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 CDC25CP30307 473 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 CEACAM8P31997 349 aaPredicted RBP3.32□□□□□ -1.88
VPS50-219ENST00000495039 MSH2P43246 934 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 CHAF1BQ13112 559 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 PRKG2Q13237 762 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 WTAPQ15007 396 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 DUSP28Q4G0W2 176 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 CFAP161Q6P656 301 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 PAQR6Q6TCH4 344 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 CFAP77Q6ZQR2 320 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 ADIPOR2Q86V24 386 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 C17orf53Q8N3J3 647 aaPredicted RBP3.32□□□□□ -1.88
VPS50-219ENST00000495039 GBGT1Q8N5D6 347 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 EMC1Q8N766 993 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 TRPC4APQ8TEL6 797 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 CCDC34Q96HJ3 373 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 SEMA3CQ99985 751 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 SRSF8Q9BRL6 282 aaKnown RBP3.32□□□□□ -1.88
VPS50-219ENST00000495039 TBC1D29Q9UFV1 150 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 PRO0461Q9UI25 63 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 DBNLQ9UJU6 430 aaKnown RBP3.32□□□□□ -1.88
VPS50-219ENST00000495039 PCNX3Q9H6A9 2034 aa3.32□□□□□ -1.88
VPS50-219ENST00000495039 A0A1W2PQ09 198 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 hCG_1807616A0A1W2PRN6 198 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 AGAP14A8MT82 685 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 CDRT15L2A8MXV6 281 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 B4DLN1 442 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 MAP2K7O14733 419 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 SMAD9O15198 467 aaKnown RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 TMCC2O75069 709 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 AP2A2O94973 939 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 RAF1P04049 648 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 LIPFP07098 398 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 CSH1P0DML2 217 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 CSH2P0DML3 217 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 PON1P27169 355 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 GCH1P30793 250 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 GPR143P51810 404 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 MRPL12P52815 198 aaKnown RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 MFAP4P55083 255 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 CUL4AQ13619 759 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 RAPSNQ13702 412 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 IRF3Q14653 427 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 RAB41Q5JT25 222 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 PLEKHS1Q5SXH7 462 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 RARS2Q5T160 578 aaKnown RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 TMEM198Q66K66 360 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 LCN10Q6JVE6 187 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 CLEC17AQ6ZS10 378 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 SZRD1Q7Z422 152 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 ARID3BQ8IVW6 561 aaPredicted RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 C11orf53Q8IXP5 236 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 TAGAPQ8N103 731 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 RASGEF1CQ8N431 466 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 GSDMBQ8TAX9 411 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 PPP4R1Q8TF05 950 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 TMEM143Q96AN5 459 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 NSUN4Q96CB9 384 aaKnown RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 CALML4Q96GE6 196 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 SMC6Q96SB8 1091 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 SLX1AQ9BQ83 275 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 GPATCH1Q9BRR8 931 aaKnown RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 LAT2Q9GZY6 243 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 CCDC68Q9H2F9 335 aa3.31□□□□□ -1.88
VPS50-219ENST00000495039 SUCLA2Q9P2R7 463 aaPredicted RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 ADD3Q9UEY8 706 aaKnown RBP3.31□□□□□ -1.88
VPS50-219ENST00000495039 PRAG1Q86YV5 1406 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 C15orf62A8K5M9 175 aa3.3□□□□□ -1.88
VPS50-219ENST00000495039 KLLNB2CW77 178 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms