RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 NRARPQ7Z6K4 114 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 FAM114A1Q8IWE2 563 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 PM20D2Q8IYS1 436 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 AADATQ8N5Z0 425 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 PAPD5Q8NDF8 572 aaKnown RBP4.51□□□□□ -1.69
VPS13A-212ENST00000493341 OR5M8Q8NGP6 311 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 TMEM163Q8TC26 289 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 RNASE8Q8TDE3 154 aaKnown RBP4.51□□□□□ -1.69
VPS13A-212ENST00000493341 SLC44A1Q8WWI5 657 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF560Q96MR9 790 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 PANX3Q96QZ0 392 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 SLC22A12Q96S37 553 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 KRTAP3-1Q9BYR8 98 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 SNX25Q9H3E2 840 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 RAB9BQ9NP90 201 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 PADI3Q9ULW8 664 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS13A-212ENST00000493341 ATP8B3O60423 1300 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 FAM90A10PA6NDY2 464 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 LRRC3CA6NJW4 275 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 DUXAA6NLW8 204 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 LETM1O95202 739 aaPredicted RBP4.51□□□□□ -1.69
VPS13A-212ENST00000493341 IFNB1P01574 187 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 CCDC192P0DO97 292 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 CTSAP10619 480 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 AHCYP23526 432 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 SLC6A6P31641 620 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 MTCP1P56278 107 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 CLDN20P56880 219 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 GALK2Q01415 458 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF284Q2VY69 593 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 ANKDD1AQ495B1 522 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.51□□□□□ -1.69
VPS13A-212ENST00000493341 NOTUMQ6P988 496 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 ADCK1Q86TW2 530 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF540Q8NDQ6 660 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 DNAAF4Q8WXU2 420 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 MTERF3Q96E29 417 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 SGF29Q96ES7 293 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 NPAP1Q9NZP6 1156 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 CGNQ9P2M7 1197 aaKnown RBP4.51□□□□□ -1.69
VPS13A-212ENST00000493341 RABL2BQ9UNT1 228 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 AURKCQ9UQB9 309 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 GRIP1Q9Y3R0 1128 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 LOXL2Q9Y4K0 774 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 CLCA3PQ9Y6N3 262 aa4.51□□□□□ -1.69
VPS13A-212ENST00000493341 WNT9BO14905 357 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 FOXN1O15353 648 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 GLCEO94923 617 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 TRIM16O95361 564 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 PLGP00747 810 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ABHD2P08910 425 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ANKRD34CP0C6C1 535 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 RPA1P27694 616 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SMSP52788 366 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 DLK1P80370 383 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 PRKCZQ05513 592 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CTTNQ14247 550 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 WSCD2Q2TBF2 565 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 PRR27Q6MZM9 219 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 DLK2Q6UY11 383 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 TRAPPC11Q7Z392 1133 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ATG9AQ7Z3C6 839 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ARHGAP22Q7Z5H3 698 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 TMPRSS11BQ86T26 416 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 AQP12AQ8IXF9 295 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 LRRC8CQ8TDW0 803 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 LMF2Q9BU23 707 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 RWDD1Q9H446 243 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SLA2Q9H6Q3 261 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 DNAJC4Q9NNZ3 241 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 HMG20BQ9P0W2 317 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ARPP21Q9UBL0 812 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CNOT11Q9UKZ1 510 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 NEMP2A6NFY4 417 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 KBTBD13C9JR72 458 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CACNB4O00305 520 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 MDM4O15151 490 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 NOL3O60936 208 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 NDUFS7O75251 213 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ETS1P14921 441 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 HOXA5P20719 270 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 RPL3P39023 403 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CAMLGP49069 296 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 NUDT6P53370 316 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 COG7P83436 770 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ID2Q02363 134 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 GAGE2BQ13066 116 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 GAGE2EQ4V326 116 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 LACTB2Q53H82 288 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ERICH6BQ5W0A0 696 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 PAPD7Q5XG87 772 aaKnown RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 IGFL4Q6B9Z1 124 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 GAGE2AQ6NT46 116 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 ZNF782Q6ZMW2 699 aaPredicted RBP4.5□□□□□ -1.69
VPS13A-212ENST00000493341 SIAH3Q8IW03 269 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CLEC1AQ8NC01 280 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 KIAA0895Q8NCT3 520 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 CCNYQ8ND76 341 aa4.5□□□□□ -1.69
VPS13A-212ENST00000493341 IPMKQ8NFU5 416 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms