RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 DPP3Q9NY33 737 aa4.55□□□□□ -1.68
HMGB1P38-201ENST00000490557 FAM169AQ9Y6X4 670 aa4.55□□□□□ -1.68
HMGB1P38-201ENST00000490557 KAT6BQ8WYB5 2073 aa4.55□□□□□ -1.68
HMGB1P38-201ENST00000490557 HYKKA2RU49 373 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 SH2B2O14492 632 aaPredicted RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 FIBPO43427 364 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 MED24O75448 989 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 SP1P08047 785 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 NR2F1P10589 423 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 ACP2P11117 423 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 NR1D1P20393 614 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 SLC9A3P48764 834 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 ZNF75DP51815 510 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 CDH11P55287 796 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 LINC01547P58512 204 aaPredicted RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 BECN1Q14457 450 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 TECRLQ5HYJ1 363 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 MDH1BQ5I0G3 518 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 GARNL3Q5VVW2 1013 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 TEX38Q6PEX7 206 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 CORO6Q6QEF8 472 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 MEX3BQ6ZN04 569 aaKnown RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 ANO5Q75V66 913 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 MARK2Q7KZI7 788 aaKnown RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 PRPF39Q86UA1 669 aaKnown RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 COMMD2Q86X83 199 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 PLD3Q8IV08 490 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 OR2T12Q8NG77 320 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 MOSPD2Q8NHP6 518 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 TAS1R2Q8TE23 839 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 SNRNP27Q8WVK2 155 aaKnown RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 SPACA9Q96E40 222 aaPredicted RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 MYADMQ96S97 322 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 SLF1Q9BQI6 1058 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 RHNO1Q9BSD3 238 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 RSPH9Q9H1X1 276 aaPredicted RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 OPA3Q9H6K4 179 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 TBC1D17Q9HA65 648 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 COQ3Q9NZJ6 369 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 DDX25Q9UHL0 483 aaKnown RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 WBP11Q9Y2W2 641 aaKnown RBP4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 TTLL3Q9Y4R7 772 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 NOTCH4Q99466 2003 aa4.54□□□□□ -1.68
HMGB1P38-201ENST00000490557 ANKUB1A6NFN9 424 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 PMS2P5A8MQ11 134 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 PRR32B1ATL7 298 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 SMIM1B2RUZ4 78 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 MEIS2O14770 477 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 ADAM20O43506 726 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 PCDH7O60245 1069 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CSPG5O95196 566 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 VDRP11473 427 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CDKN1AP38936 164 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 RAD52P43351 418 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CAPZA2P47755 286 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 PDX1P52945 283 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CDH13P55290 713 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 HYAL1Q12794 435 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 TMEM266Q2M3C6 531 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CBWD6Q4V339 395 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CBWD3Q5JTY5 395 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 OTUD3Q5T2D3 398 aaPredicted RBP4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 NAA16Q6N069 864 aaPredicted RBP4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 TMPRSS11FQ6ZWK6 438 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 ZNF554Q86TJ5 538 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CFAP206Q8IYR0 622 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 TTC30BQ8N4P2 665 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 CPSF7Q8N684 471 aaKnown RBP4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 TMEM143Q96AN5 459 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 ERP27Q96DN0 273 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 SGK494Q96LW2 274 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 DGAT2Q96PD7 388 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 ACKR4Q9NPB9 350 aa4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 NOL7Q9UMY1 257 aaKnown RBP4.53□□□□□ -1.68
HMGB1P38-201ENST00000490557 FLT1P17948 1338 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 ZNF541Q9H0D2 1346 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 A0A087WYN8 130 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 PRR23AA6NEV1 266 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 PLOD2O00469 737 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 IGHV4-38-2P0DP08 117 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 PFKFB1P16118 471 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 MT3P25713 68 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 DCTP40126 519 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 TPD52P55327 224 aaPredicted RBP4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 NUCB1Q02818 461 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 HSPB3Q12988 150 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 TAF13Q15543 124 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 GFI1BQ5VTD9 330 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 RBMS3Q6XE24 437 aaKnown RBP4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 TRPT1Q86TN4 253 aaKnown RBP4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 ISCA2Q86U28 154 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 ADIPOR2Q86V24 386 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 FOXP4Q8IVH2 680 aaPredicted RBP4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 POGLUT1Q8NBL1 392 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 RNF128Q8TEB7 428 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 CCDC107Q8WV48 283 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 NXNL1Q96CM4 212 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 PKNOX2Q96KN3 472 aa4.52□□□□□ -1.69
HMGB1P38-201ENST00000490557 SFXN2Q96NB2 322 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms