RNA–Protein interactions for RNA: ENST00000490516.5

EXOSC3-207, Transcript of exosome component 3, humanhuman

TSL 2

Gene EXOSC3, Length 773 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-207ENST00000490516 MAN2A1Q16706 1144 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 PDPK2PQ6A1A2 396 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 ALG1LQ6GMV1 187 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 TMCO3Q6UWJ1 677 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 SHISA6Q6ZSJ9 500 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 FAM20CQ8IXL6 584 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 SPDYE1Q8NFV5 336 aaPredicted RBP13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 DNAJB8Q8NHS0 232 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 GDAP1Q8TB36 358 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 ARRDC2Q8TBH0 407 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 ZFPM2Q8WW38 1151 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 N4BP2L2Q92802 583 aaPredicted RBP13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 NACC2Q96BF6 587 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 TIGD1Q96MW7 591 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 PITPNM3Q9BZ71 974 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 NDST4Q9H3R1 872 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 DEF6Q9H4E7 631 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 ZFYVE1Q9HBF4 777 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 FAM60AQ9NP50 221 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 SAMSN1Q9NSI8 373 aaKnown RBP13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 AP1M2Q9Y6Q5 423 aa13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 FBN1P35555 2871 aaKnown RBP13.2□□□□□ -0.3
EXOSC3-207ENST00000490516 SNRNP200O75643 2136 aaKnown RBP13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 PRPSAP2O60256 369 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 KCNJ13O60928 360 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 DESP17661 470 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 IGFBP2P18065 325 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 CA4P22748 312 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 CTSCP53634 463 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 BIVMQ86UB2 503 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 ZNF655Q8N720 491 aaPredicted RBP13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 OR11G2Q8NGC1 345 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 CA5BP1Q8WTZ4 195 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 MAGED4Q96JG8 741 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 LIME1Q9H400 295 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 ZWILCHQ9H900 591 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 TXLNGQ9NUQ3 528 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 RWDD2AQ9UIY3 292 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 ZNF835Q9Y2P0 537 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 NBEAL1Q6ZS30 2694 aa13.19□□□□□ -0.3
EXOSC3-207ENST00000490516 STAB1Q9NY15 2570 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 C17orf113A0A1B0GUU1 675 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 OR2AG2A6NM03 316 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 BTN3A3O00478 584 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 ZNHIT1O43257 154 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 SLCO2B1O94956 709 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 MIPP30301 263 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 ADAM8P78325 824 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 TMPRSS15P98073 1019 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 FOLH1Q04609 750 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 ATP13A5Q4VNC0 1218 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 VWA3BQ502W6 1294 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 ERICH6BQ5W0A0 696 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 METRNLQ641Q3 311 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 TMC3Q7Z5M5 1100 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 RASGEF1AQ8N9B8 481 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 DNAAF3Q8N9W5 541 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 NINJ1Q92982 152 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 SDCCAG3Q96C92 435 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 TTC25Q96NG3 672 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 ZNF559Q9BR84 538 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 SRMSQ9H3Y6 488 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 PTGFRNQ9P2B2 879 aa13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 NFKBIL1Q9UBC1 381 aaPredicted RBP13.18□□□□□ -0.3
EXOSC3-207ENST00000490516 H3BRJ5 948 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 MATN2O00339 956 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 BTN3A1O00481 513 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 ZSCAN9O15535 394 aaPredicted RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 PRAMEF2O60811 474 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 PRKCSHP14314 528 aaPredicted RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 ITGAXP20702 1163 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 UGT1A4P22310 534 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 CES1P23141 567 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 SOX11P35716 441 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 GABRA4P48169 554 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 RBBP7Q16576 425 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 TMEM220Q6QAJ8 160 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 C3P1Q6ZMU1 363 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 Q6ZPB1 254 aaPredicted RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 SPPL2CQ8IUH8 684 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 BEND7Q8N7W2 519 aaPredicted RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 LRRN4CLQ8ND94 238 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 LCN9Q8WX39 176 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 PSMF1Q92530 271 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 HAS2Q92819 552 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 ARSGQ96EG1 525 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 VPS35Q96QK1 796 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 SPSB2Q99619 263 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 CLSTN2Q9H4D0 955 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 SOX17Q9H6I2 414 aaPredicted RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 ZNF160Q9HCG1 818 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 NPDC1Q9NQX5 325 aaPredicted RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 RAD18Q9NS91 495 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 SEPT11Q9NVA2 429 aaKnown RBP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 RBM22Q9NW64 420 aaKnown RBP eCLIP13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 FAM8A1Q9UBU6 413 aa13.17□□□□□ -0.3
EXOSC3-207ENST00000490516 HLA-DQB2P05538 268 aa13.16□□□□□ -0.3
EXOSC3-207ENST00000490516 C8BP07358 591 aa13.16□□□□□ -0.3
EXOSC3-207ENST00000490516 MMP2P08253 660 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms