RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 ATP4BP51164 291 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 TRAF3Q13114 568 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 RBBP7Q16576 425 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 RNF165Q6ZSG1 346 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 TRIM74Q86UV6 250 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 LONP2Q86WA8 852 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 ZNF547Q8IVP9 402 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 RBM15BQ8NDT2 890 aaKnown RBP13.74□□□□□ -0.21
CLK3-204ENST00000483723 FBXO27Q8NI29 283 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 MCOLN3Q8TDD5 553 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 TMEM159Q96B96 161 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 MSANTD3Q96H12 275 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 CATSPER2Q96P56 530 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 OR2AG1Q9H205 316 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 SLC32A1Q9H598 525 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 AKTIPQ9H8T0 292 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 IPPKQ9H8X2 491 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 FBXL12Q9NXK8 326 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 WWOXQ9NZC7 414 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 OPTCQ9UBM4 332 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 TIMM22Q9Y584 194 aa13.74□□□□□ -0.21
CLK3-204ENST00000483723 CHUKO15111 745 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 UBDO15205 165 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 STK16O75716 305 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 RNASEH2AO75792 299 aaKnown RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 OTCP00480 354 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 HIST1H2AGP0C0S8 130 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 THRAP10827 490 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 ZNF8P17098 575 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 HIST1H2ADP20671 130 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 TRIM23P36406 574 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 SLC6A12P48065 614 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 PIK3CGP48736 1102 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 IRX1P78414 480 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 RIPK1Q13546 671 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 GTF2H3Q13889 308 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 PTK2BQ14289 1009 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 FGL2Q14314 439 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 MAP7D1Q3KQU3 841 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 FBXO43Q4G163 708 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 TMEM259Q4ZIN3 620 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 XKR7Q5GH72 579 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 LETMD1Q6P1Q0 360 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 CYB5D1Q6P9G0 228 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 TP53I13Q8NBR0 393 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 FBXO15Q8NCQ5 510 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 OR4F6Q8NGB9 312 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 RP9Q8TA86 221 aaKnown RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 FBXL8Q96CD0 374 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 HIST1H2AHQ96KK5 128 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 HIST1H2AJQ99878 128 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 H2AFJQ9BTM1 129 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 TEX101Q9BY14 249 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 MMADHCQ9H3L0 296 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 PFDN4Q9NQP4 134 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLK3-204ENST00000483723 ARL15Q9NXU5 204 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 BRWD1Q9NSI6 2320 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 GIPC1O14908 333 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 CCNT2O60583 730 aaKnown RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 DNTTP04053 509 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 CD1EP15812 388 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 GDF5P43026 501 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 CCR3P51677 355 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 RPS21P63220 83 aaKnown RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 CDK3Q00526 305 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 PLOD1Q02809 727 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 SQLEQ14534 574 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 OGFOD2Q6N063 350 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 KIAA1161Q6NSJ0 714 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 MBOAT1Q6ZNC8 495 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 USP30Q70CQ3 517 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 C11orf96Q7Z7L8 435 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 KLHDC8AQ8IYD2 350 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 LILRA3Q8N6C8 439 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 POU5F2Q8N7G0 328 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 OR2L2Q8NH16 312 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 ASB12Q8WXK4 309 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 RTKNQ9BST9 563 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 SLC2A4RGQ9NR83 387 aa13.73□□□□□ -0.21
CLK3-204ENST00000483723 DNMT3AQ9Y6K1 912 aaPredicted RBP13.73□□□□□ -0.21
CLK3-204ENST00000483723 MYO10Q9HD67 2058 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 ZFC3H1O60293 1989 aaKnown RBP13.72□□□□□ -0.21
CLK3-204ENST00000483723 MGAT4DA6NG13 374 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 ARHGEF33A8MVX0 844 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 CRCPO75575 148 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 POP7O75817 140 aaKnown RBP13.72□□□□□ -0.21
CLK3-204ENST00000483723 CHEK2O96017 543 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 LINC00032P0C843 101 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 EBLN1P0CF75 366 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 EPB42P16452 691 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 EPORP19235 508 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 MRPL19P49406 292 aaKnown RBP13.72□□□□□ -0.21
CLK3-204ENST00000483723 ABRQ12979 859 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 DNAL1Q4LDG9 190 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 FBXW10Q5XX13 1052 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 NEK5Q6P3R8 708 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 LRRC70Q7Z2Q7 622 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 MILR1Q7Z6M3 343 aa13.72□□□□□ -0.21
CLK3-204ENST00000483723 HEATR4Q86WZ0 1026 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 180.1 ms