RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 LCN9Q8WX39 176 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 CPT1BQ92523 772 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 ABHD17AQ96GS6 310 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 ELMO2Q96JJ3 720 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 TTC1Q99614 292 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 FAM118BQ9BPY3 351 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 TMEM121Q9BTD3 319 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 PITPNM3Q9BZ71 974 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 SRMSQ9H3Y6 488 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 KCND1Q9NSA2 647 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 SOHLH2Q9NX45 425 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 MRPS18BQ9Y676 258 aaKnown RBP11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 MAST4O15021 2626 aa11.8□□□□□ -0.52
SQSTM1-207ENST00000481335 HEATR9A2RTY3 570 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 C2orf74A8MZ97 194 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 SUN1O94901 812 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 POLBP06746 335 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 RAB40ALP0C0E4 278 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 MSNP26038 577 aaKnown RBP11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 PTPN4P29074 926 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 GDF10P55107 478 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 NFKB2Q00653 900 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 KLRB1Q12918 225 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 ERV3-1Q14264 604 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 SPARCL1Q14515 664 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 KCNAB1Q14722 419 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 POU6F1Q14863 301 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 UGT8Q16880 541 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 CERS6Q6ZMG9 384 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 NLRP9Q7RTR0 991 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 LILRA3Q8N6C8 439 aaPredicted RBP11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 OR4E2Q8NGC2 313 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 CT55Q8WUE5 264 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 SGSM3Q96HU1 749 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 FERD3LQ96RJ6 166 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 RANBP9Q96S59 729 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 DPH2Q9BQC3 489 aaPredicted RBP11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 TWSG1Q9GZX9 223 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 CHRNA10Q9GZZ6 450 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 ACTL8Q9H568 366 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 FAM8A1Q9UBU6 413 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 PACSIN2Q9UNF0 486 aaPredicted RBP11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 MAN2B2Q9Y2E5 1009 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 FLNCQ14315 2725 aa11.79□□□□□ -0.52
SQSTM1-207ENST00000481335 PIPSLA2A3N6 862 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 KRT86O43790 486 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 KATNA1O75449 491 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 FTCDO95954 541 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 HBQ1P09105 142 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 POLR2CP19387 275 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 PRDX3P30048 256 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 SHMT2P34897 504 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 PPARGP37231 505 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 SEMA5AQ13591 1074 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 BOP1Q14137 746 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 OASLQ15646 514 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 DBN1Q16643 649 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 ATP1A1-AS1Q5TC04 95 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 AFTPHQ6ULP2 937 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 TAS2R42Q7RTR8 314 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 AMIGO1Q86WK6 493 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 TBC1D21Q8IYX1 336 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 DNAAF3Q8N9W5 541 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 OR52E1Q8NGJ3 308 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 TFGQ92734 400 aaPredicted RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 C17orf62Q9BQA9 187 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 TSSK1BQ9BXA7 367 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 EPN3Q9H201 632 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 FAM96AQ9H5X1 160 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 POLG2Q9UHN1 485 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 CAPN6Q9Y6Q1 641 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 SNRNP200O75643 2136 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 LRRK2Q5S007 2527 aa11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 SPENQ96T58 3664 aaKnown RBP11.78□□□□□ -0.52
SQSTM1-207ENST00000481335 FER1L5A0AVI2 2057 aa11.77□□□□□ -0.52
SQSTM1-207ENST00000481335 GSAPA4D1B5 854 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 CDC14CA4D256 554 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 AP3B1O00203 1094 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 BTN3A1O00481 513 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 LIASO43766 372 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 NTRK1P04629 796 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 OR56A5P0C7T3 313 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 FOXN2P32314 431 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 PREPP48147 710 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 CDKN1CP49918 316 aaPredicted RBP11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 ACVR1Q04771 509 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 GPR19Q15760 415 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 C4orf22Q6V702 233 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 PTRH1Q86Y79 214 aaKnown RBP11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 PIANPQ8IYJ0 282 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 DSELQ8IZU8 1212 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 OR5K2Q8NHB8 316 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 TLR10Q9BXR5 811 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 NLNQ9BYT8 704 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 TRIM4Q9C037 500 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 SMARCAL1Q9NZC9 954 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 OR6C2Q9NZP2 312 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 SERTAD3Q9UJW9 196 aa11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 FARSAQ9Y285 508 aaKnown RBP11.77□□□□□ -0.53
SQSTM1-207ENST00000481335 R3HDM2Q9Y2K5 976 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms