RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 POP5Q969H6 163 aaKnown RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 COPS8Q99627 209 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 KCTD14Q9BQ13 255 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 NANOGQ9H9S0 305 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 RAD18Q9NS91 495 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 MARK1Q9P0L2 795 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 FNDC3AQ9Y2H6 1198 aaKnown RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 A0A1W2PRU2 124 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 KPNA5O15131 536 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 C1SP09871 688 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 PSMC3P17980 439 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 AOAHP28039 575 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 RPL5P46777 297 aaKnown RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 HSPA7P48741 367 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 HNMTP50135 292 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 POLR2LP62875 67 aaKnown RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 PRKCQQ04759 706 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 ZNF33BQ06732 778 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 PHKG1Q16816 387 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 PLEKHS1Q5SXH7 462 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 TMCO2Q7Z6W1 182 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 TSPAN33Q86UF1 283 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 LEMD2Q8NC56 503 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 ESAMQ96AP7 390 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 CENPNQ96H22 339 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 CDK15Q96Q40 435 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 WWOXQ9NZC7 414 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 MAGEL2Q9UJ55 1249 aa11.98□□□□□ -0.49
PTPRF-212ENST00000477970 EIF3LQ9Y262 564 aaKnown RBP11.98□□□□□ -0.49
PTPRF-212ENST00000477970 SCAMP3O14828 347 aaKnown RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 AP2A2O94973 939 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 TRIM16O95361 564 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 ANXA5P08758 320 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 OR56A5P0C7T3 313 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 UGT1A6P19224 532 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 UGT1A1P22309 533 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 UGT1A4P22310 534 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 FASP25445 335 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 VARSP26640 1264 aaKnown RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 HOXA9P31269 272 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 GKP32189 559 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 UGT1A3P35503 534 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 UGT1A5P35504 534 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 CTSOP43234 321 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 CCT8P50990 548 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 B4GALNT1Q00973 533 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 ATP6AP1Q15904 470 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 AP5B1Q2VPB7 878 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 C18orf21Q32NC0 220 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 TBCELQ5QJ74 424 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 BRAT1Q6PJG6 821 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 RAVER1Q8IY67 606 aaKnown RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 TBC1D21Q8IYX1 336 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 VPS33AQ96AX1 596 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 C9orf16Q9BUW7 83 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 SLC12A9Q9BXP2 914 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 PBX4Q9BYU1 374 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 ZNF639Q9UID6 485 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 MSRAQ9UJ68 235 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 NRG2O14511 850 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 SPATA31D3P0C874 917 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 G6PDP11413 515 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 EPB42P16452 691 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 LHCGRP22888 699 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 SPINT3P49223 89 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 CCNHP51946 323 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-212ENST00000477970 NR6A1Q15406 480 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 NHSL2Q5HYW2 709 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 C6orf52Q5T4I8 152 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 BORAQ6PGQ7 559 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 SPATA31D4Q6ZUB0 917 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 SPPL2CQ8IUH8 684 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 FAM9CQ8IZT9 166 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 CMTM8Q8IZV2 173 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 GALNT15Q8N3T1 639 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 CLDN19Q8N6F1 224 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 OTUB2Q96DC9 234 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 C1orf50Q9BV19 199 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 IL1RL2Q9HB29 575 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 NEUROG3Q9Y4Z2 214 aa11.97□□□□□ -0.49
PTPRF-212ENST00000477970 CXCL14O95715 111 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 POU2F2P09086 479 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 FAM117BQ6P1L5 589 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 ELMSAN1Q6PJG2 1045 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 KLHDC8AQ8IYD2 350 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 SLC32A1Q9H598 525 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 DUS2Q9NX74 493 aaKnown RBP11.96□□□□□ -0.49
PTPRF-212ENST00000477970 PKD2L2Q9NZM6 624 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 TBC1D14Q9P2M4 693 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 MANBAO00462 879 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 TULP3O75386 442 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 TIPRLO75663 272 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 STK16O75716 305 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 IL6P05231 212 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 PABPC1P11940 636 aaKnown RBP11.96□□□□□ -0.49
PTPRF-212ENST00000477970 HOXB6P17509 224 aaKnown RBP11.96□□□□□ -0.49
PTPRF-212ENST00000477970 NFKBIAP25963 317 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 SLC6A12P48065 614 aa11.96□□□□□ -0.49
PTPRF-212ENST00000477970 STK19P49842 368 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-212ENST00000477970 BOP1Q14137 746 aaKnown RBP11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms