RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 PBLDP30039 288 aaPredicted RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 PRDX3P30048 256 aaKnown RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 CBSP35520 551 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 PBX1P40424 430 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 HALP42357 657 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 LMAN1P49257 510 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 ADCY2Q08462 1091 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 WASHC5Q12768 1159 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 NCF4Q15080 339 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 PLCL1Q15111 1095 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 LLGL1Q15334 1064 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 SLC14A2Q15849 920 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 ANO6Q4KMQ2 910 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 ZNF658BQ4V348 819 aaPredicted RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 TEX44Q53QW1 395 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 VWA2Q5GFL6 755 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 SIRPB2Q5JXA9 342 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 FNBP1LQ5T0N5 605 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 ALKBH5Q6P6C2 394 aaKnown RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 KLHL35Q6PF15 583 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 IGFL3Q6UXB1 125 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 SPNS3Q6ZMD2 512 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 CDHR3Q6ZTQ4 885 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 DET1Q7L5Y6 550 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 DAAM2Q86T65 1068 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 KCNMB4Q86W47 210 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 NXPE1Q8N323 547 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 SLC25A41Q8N5S1 370 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 OR8K5Q8NH50 307 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 BRSK1Q8TDC3 778 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 CPT1BQ92523 772 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 CLIP3Q96DZ5 547 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 OXNAD1Q96HP4 312 aaPredicted RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 MRGPRX2Q96LB1 330 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 TEKT5Q96M29 485 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 SPRTNQ9H040 489 aaPredicted RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 KIR3DX1Q9H7L2 352 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 CBX8Q9HC52 389 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 FAM60AQ9NP50 221 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 FAM8A1Q9UBU6 413 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 POMT2Q9UKY4 750 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 GTF3C3Q9Y5Q9 886 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 KLF2Q9Y5W3 355 aaPredicted RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 DNMT3AQ9Y6K1 912 aaPredicted RBP9.04□□□□□ -0.96
VCL-204ENST00000472585 FBN3Q75N90 2809 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 CCDC88CQ9P219 2028 aa9.04□□□□□ -0.96
VCL-204ENST00000472585 MGAT4DA6NG13 374 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 ZNF749O43361 778 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 IGHEP01854 428 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 POLBP06746 335 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 EDN3P14138 238 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 VCLP18206 1134 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 OTX2P32243 289 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 GABRA4P48169 554 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 WNT3AP56704 352 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 TYRO3Q06418 890 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 MSLNQ13421 630 aaPredicted RBP9.03□□□□□ -0.96
VCL-204ENST00000472585 XRCC4Q13426 336 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 OLIG2Q13516 323 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 GTF2H3Q13889 308 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 MYBPC3Q14896 1274 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 ZIC1Q15915 447 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 TMTC4Q5T4D3 741 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 Q6ZS92 163 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 MRGPREQ86SM8 312 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 OOSP2Q86WS3 158 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 GALNT16Q8N428 558 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 ZFPM2Q8WW38 1151 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 FER1L6-AS2Q96M78 137 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 C12orf66Q96MD2 445 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 TTC25Q96NG3 672 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 IP6K3Q96PC2 410 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 TRAPPC9Q96Q05 1148 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 GORASP1Q9BQQ3 440 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 PITPNM3Q9BZ71 974 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 ACTR5Q9H9F9 607 aaPredicted RBP9.03□□□□□ -0.96
VCL-204ENST00000472585 SOHLH2Q9NX45 425 aa9.03□□□□□ -0.96
VCL-204ENST00000472585 GLYATL1P3A0A0U1RQE8 302 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 A0A1B0GTL3 188 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 BTN3A1O00481 513 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 PEX12O00623 359 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 E2F3O00716 465 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 LDB2O43679 373 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 SERPING1P05155 500 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 UMODP07911 640 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 STSP08842 583 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 MSL3P1P0C860 447 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 TPBGLP0DKB5 382 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 PECAM1P16284 738 aaPredicted RBP9.02□□□□□ -0.97
VCL-204ENST00000472585 NFKB1P19838 968 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 CDH3P22223 829 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 HTR1EP28566 365 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 PDHA2P29803 388 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 SPAM1P38567 509 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 PREPP48147 710 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 XIAPP98170 497 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 IQCB1Q15051 598 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 PRKD1Q15139 912 aaPredicted RBP9.02□□□□□ -0.97
VCL-204ENST00000472585 NFKBIBQ15653 356 aa9.02□□□□□ -0.97
VCL-204ENST00000472585 FIGNQ5HY92 759 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms