RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ARFIP1P53367 373 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MLLT6P55198 1093 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 KRR1Q13601 381 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 DOC2BQ14184 412 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MEP1AQ16819 746 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF404Q494X3 552 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 DDX59Q5T1V6 619 aaKnown RBP eCLIP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SAMD7Q7Z3H4 446 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CILP2Q8IUL8 1156 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 TAGAPQ8N103 731 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GALNT4Q8N4A0 578 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LSMEM1Q8N8F7 131 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FAM110BQ8TC76 370 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FBXL20Q96IG2 436 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 DUSP16Q9BY84 665 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ACAD8Q9UKU7 415 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ELF5Q9UKW6 265 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PCDHB14Q9Y5E9 798 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 A0A1B0GTL3 188 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 HMX3A6NHT5 357 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 EVPLLA8MZ36 301 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SYNCRIPO60506 623 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MSH3P20585 1137 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ALAS2P22557 587 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 HMGCLP35914 325 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 STC1P52823 247 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FASTKQ14296 549 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MAPRE1Q15691 268 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LRRC26Q2I0M4 334 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PRAMEF18Q5VWM3 479 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 STEAP3Q658P3 488 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 OR4C15Q8NGM1 316 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 WNK4Q96J92 1243 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CAPNS2Q96L46 248 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ZCCHC4Q9H5U6 513 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FAM95CA0A1B0GW59 222 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 J3QRK9 145 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 RECKO95980 971 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GAS1P54826 345 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CDC42EP1Q00587 391 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 IRF9Q00978 393 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PWP1Q13610 501 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 NR1D2Q14995 579 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PAGE3Q5JUK9 113 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ATF7IP2Q5U623 682 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CD300LDQ6UXZ3 194 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 DNM1P46Q6ZS02 220 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 OR5K1Q8NHB7 308 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 KCTD4Q8WVF5 259 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 APH1BQ8WW43 257 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ATOH1Q92858 354 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FAM162AQ96A26 154 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FBXL8Q96CD0 374 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LGALS12Q96DT0 336 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MRGPRX2Q96LB1 330 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ZMAT2Q96NC0 199 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 ALG2Q9H553 416 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 AKTIPQ9H8T0 292 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PSORS1C1Q9UIG5 152 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 RPS10-NUDT3A0A1W2PQS6 291 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 AIM2O14862 343 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 AURKAO14965 403 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 HBP1O60381 514 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SLITRK5O94991 958 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FUT4P22083 530 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 STAT5BP51692 787 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 BLVRAP53004 296 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 TRAF3Q13114 568 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SLC9A5Q14940 896 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 FRMPD2BQ6IN97 320 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 CTU1Q7Z7A3 348 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 SERPINA11Q86U17 422 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LURAP1LQ8IV03 231 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 RDH10Q8IZV5 341 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 OR9I1Q8NGQ6 314 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 NODALQ96S42 347 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 TMEM209Q96SK2 561 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 COLEC11Q9BWP8 271 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 GMPR2Q9P2T1 348 aaKnown RBP5.26□□□□□ -1.57
SYNE1-220ENST00000471834 MTRRQ9UBK8 725 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 VPS9D1Q9Y2B5 631 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 PADI2Q9Y2J8 665 aa5.26□□□□□ -1.57
SYNE1-220ENST00000471834 LOC105371267A0A1B0GV96 52 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 MAFKO60675 156 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 LRG1P02750 347 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 GOT1P17174 413 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 ARF4P18085 180 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PSMB4P28070 264 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PIGAP37287 484 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SLC1A2P43004 574 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TPI1P60174 286 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 PITX1P78337 314 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 LIPEQ05469 1076 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 TPBGQ13641 420 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 RAB30Q15771 203 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SHQ1Q6PI26 577 aaKnown RBP5.25□□□□□ -1.57
SYNE1-220ENST00000471834 MIER2Q8N344 545 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 CLDN22Q8N7P3 220 aa5.25□□□□□ -1.57
SYNE1-220ENST00000471834 SETD9Q8NE22 299 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms