RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 RAB11FIP2Q7L804 512 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 OTOAQ7RTW8 1153 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 GALNT7Q86SF2 657 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 ANKMY2Q8IV38 441 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 TBC1D21Q8IYX1 336 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 ZBED8Q8IZ13 594 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 FBXO25Q8TCJ0 367 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 PYROXD1Q8WU10 500 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 CCDC74BQ96LY2 380 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 CMKLR1Q99788 373 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 FAM129AQ9BZQ8 928 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 ZMYND15Q9H091 742 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 CCDC68Q9H2F9 335 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 CCDC86Q9H6F5 360 aaKnown RBP14.9□□□□□ -0.02
SDC3-203ENST00000471567 FBXO6Q9NRD1 293 aaPredicted RBP14.9□□□□□ -0.02
SDC3-203ENST00000471567 KLHL42Q9P2K6 505 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 AK5Q9Y6K8 562 aa14.9□□□□□ -0.02
SDC3-203ENST00000471567 MN1Q10571 1320 aaPredicted RBP14.9□□□□□ -0.02
SDC3-203ENST00000471567 TOX3O15405 576 aaPredicted RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 NIPSNAP2O75323 286 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 DXOO77932 396 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 HAUS5O94927 633 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 C9P02748 559 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 TYRP1P17643 537 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 CHRM3P20309 590 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 CAPZBP47756 277 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 CARSP49589 748 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 GABREP78334 506 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 CYP4F3Q08477 520 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 FASTKD3Q14CZ7 662 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 TRADDQ15628 312 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 C3orf38Q5JPI3 329 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 TEDDM1Q5T9Z0 273 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 FBXO39Q8N4B4 442 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 KDF1Q8NAX2 398 aaPredicted RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 NOA1Q8NC60 698 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 PHC3Q8NDX5 983 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 GSDMBQ8TAX9 411 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 KCNJ9Q92806 393 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 ZDHHC12Q96GR4 267 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 TRIT1Q9H3H1 467 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 TFB2MQ9H5Q4 396 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 SAYSD1Q9NPB0 183 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 PPANQ9NQ55 473 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 FAM114A2Q9NRY5 505 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 MOCS1Q9NZB8 636 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 TMEM9Q9P0T7 183 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 POLG2Q9UHN1 485 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 SATB2Q9UPW6 733 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 ASF1AQ9Y294 204 aa14.89□□□□□ -0.03
SDC3-203ENST00000471567 TPRP12270 2363 aaKnown RBP14.89□□□□□ -0.03
SDC3-203ENST00000471567 ACACBO00763 2458 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 A0A1W2PNU3 283 aaPredicted RBP14.88□□□□□ -0.03
SDC3-203ENST00000471567 E5RI56 91 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 PLD2O14939 933 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 CAPN5O15484 640 aaPredicted RBP14.88□□□□□ -0.03
SDC3-203ENST00000471567 KDM1AO60341 852 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 RPN2P04844 631 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 MPOP05164 745 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 GSTA2P09210 222 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 ATP5DP30049 168 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 CSE1LP55060 971 aaKnown RBP14.88□□□□□ -0.03
SDC3-203ENST00000471567 MPP1Q00013 466 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 GUCY2DQ02846 1103 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 MGAT5Q09328 741 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 GBX1Q14549 363 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 ZNF549Q6P9A3 640 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 TRMT10BQ6PF06 316 aaKnown RBP14.88□□□□□ -0.03
SDC3-203ENST00000471567 CNSTQ6PJW8 725 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 UNC5DQ6UXZ4 953 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 CYS1Q717R9 158 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 ARHGAP22Q7Z5H3 698 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 OOSP2Q86WS3 158 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 VRK3Q8IV63 474 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 PALM2Q8IXS6 379 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 AGBL5Q8NDL9 886 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 OR5K2Q8NHB8 316 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 LCN9Q8WX39 176 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 RSC1A1Q92681 617 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 PRR11Q96HE9 360 aaPredicted RBP14.88□□□□□ -0.03
SDC3-203ENST00000471567 CNTNAP3BQ96NU0 1288 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 CNTNAP3Q9BZ76 1288 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 LOXL2Q9Y4K0 774 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 CHD8Q9HCK8 2581 aa14.88□□□□□ -0.03
SDC3-203ENST00000471567 AKAP13Q12802 2813 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 ESYT3A0FGR9 886 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 OR5K3A6NET4 321 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 AHSGP02765 367 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 ANKRD34CP0C6C1 535 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 MPSTP25325 297 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 GABRB3P28472 473 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 RBMS1P29558 406 aaKnown RBP14.87□□□□□ -0.03
SDC3-203ENST00000471567 CSTF2P33240 577 aaKnown RBP eCLIP14.87□□□□□ -0.03
SDC3-203ENST00000471567 CLCN7P51798 805 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 ILF2Q12905 390 aaKnown RBP14.87□□□□□ -0.03
SDC3-203ENST00000471567 C16orf72Q14CZ0 275 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 TTLL9Q3SXZ7 439 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 ZBTB2Q8N680 514 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 OR52E1Q8NGJ3 308 aa14.87□□□□□ -0.03
SDC3-203ENST00000471567 OR5AR1Q8NGP9 310 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms