RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 NR1H2P55055 460 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 ANKRD34AQ69YU3 496 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 OR10A6Q8NH74 314 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SLC22A17Q8WUG5 538 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 CEP295NLQ96MC4 621 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 TRIM15Q9C019 465 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 ANAPC2Q9UJX6 822 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 TNPO3Q9Y5L0 923 aaKnown RBP18.72■□□□□ 0.59
VIM-203ENST00000469543 H0YJX3 145 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 ACRP10323 421 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SRCP12931 536 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 TCF3P15923 654 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 ZNF23P17027 643 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 DGKAP23743 735 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 NFKBIAP25963 317 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 GRIK2Q13002 908 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 COL4A6Q14031 1691 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SLC39A5Q6ZMH5 540 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 NXPE1Q8N323 547 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 LIX1Q8N485 282 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 FIG4Q92562 907 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 CGREF1Q99674 301 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SH3GL3Q99963 347 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SLC46A2Q9BY10 475 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 ZDHHC6Q9H6R6 413 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 HEBP1Q9NRV9 189 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 ATP11BQ9Y2G3 1177 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 SH3BP1Q9Y3L3 701 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 OARD1Q9Y530 152 aa18.72■□□□□ 0.59
VIM-203ENST00000469543 B4GAT1O43505 415 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 ULK1O75385 1050 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 OLFM2O95897 454 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 UGT2B4P06133 528 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 GSNP06396 782 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 CDH2P19022 906 aaPredicted RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 EPORP19235 508 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 CCR2P41597 374 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 FOXM1Q08050 763 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 LAPTM5Q13571 262 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 KIAA0040Q15053 153 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 ZNF648Q5T619 568 aaPredicted RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 EFL1Q7Z2Z2 1120 aaKnown RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 ANKRD46Q86W74 232 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 TMEM25Q86YD3 366 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 HS3ST5Q8IZT8 346 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 OR2AP1Q8NGE2 309 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 GFM2Q969S9 779 aaKnown RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 ZNF583Q96ND8 569 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 THUMPD3Q9BV44 507 aaKnown RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 ATP13A3Q9H7F0 1226 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 ENO2P09104 434 aaPredicted RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 RGS4P49798 205 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 POM121L1PQ3SYA9 428 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 SERPINA13PQ6UXR4 307 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 DPY19L3Q6ZPD9 716 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 BEND7Q8N7W2 519 aaPredicted RBP18.71■□□□□ 0.59
VIM-203ENST00000469543 CHST14Q8NCH0 376 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 TSPEARQ8WU66 669 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 SCAMP4Q969E2 229 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 MTG2Q9H4K7 406 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 NTN4Q9HB63 628 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 PNPLA3Q9NST1 481 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 SLC25A37Q9NYZ2 338 aa18.71■□□□□ 0.59
VIM-203ENST00000469543 AREL1O15033 823 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 GLUD1P00367 558 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 VARSP26640 1264 aaKnown RBP18.7■□□□□ 0.58
VIM-203ENST00000469543 ATP6AP1Q15904 470 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 ENPP6Q6UWR7 440 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 FOXJ1Q92949 421 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 ACDQ96AP0 544 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 CORO1BQ9BR76 489 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 EPB41L1Q9H4G0 881 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 ARL15Q9NXU5 204 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 TMPRSS11EQ9UL52 423 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 TRBV5-4A0A0C4DH59 114 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 A0A1W2PQ67 120 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 SPAM1P38567 509 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 RPIAP49247 311 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 PHC1P78364 1004 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 NKG7Q16617 165 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 INTS11Q5TA45 600 aaKnown RBP18.7■□□□□ 0.58
VIM-203ENST00000469543 TTC33Q6PID6 262 aaPredicted RBP18.7■□□□□ 0.58
VIM-203ENST00000469543 FBXO30Q8TB52 745 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 SORCS1Q8WY21 1168 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 EGLN2Q96KS0 407 aa18.7■□□□□ 0.58
VIM-203ENST00000469543 TMX2-CTNND1H3BSU7 103 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 GPIP06744 558 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 CSF2RAP15509 400 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 EEFSECP57772 596 aaKnown RBP18.69■□□□□ 0.58
VIM-203ENST00000469543 SLC36A3Q495N2 470 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 CYBRD1Q53TN4 286 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 ZNF689Q96CS4 500 aaPredicted RBP18.69■□□□□ 0.58
VIM-203ENST00000469543 CLK4Q9HAZ1 481 aaKnown RBP18.69■□□□□ 0.58
VIM-203ENST00000469543 DLGAP4Q9Y2H0 992 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 LEFTY2O00292 366 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 LRATO95237 230 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 TACR1P25103 407 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 SERPINA4P29622 427 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 CTBSQ01459 385 aa18.69■□□□□ 0.58
VIM-203ENST00000469543 BOP1Q14137 746 aaKnown RBP18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms