RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 SF3B4Q15427 424 aaKnown RBP eCLIP7.17□□□□□ -1.268e-8■■■■□ 24.8
USP48-206ENST00000464577 MAPK11Q15759 364 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 DUSP28Q4G0W2 176 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 RUNDC3AQ59EK9 446 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 UBE2UQ5VVX9 321 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 ATG9BQ674R7 924 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 ANKRD34AQ69YU3 496 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 RNF165Q6ZSG1 346 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 LRRC8DQ7L1W4 858 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 PAGE2Q7Z2X7 111 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 DPP9Q86TI2 863 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 CALHM3Q86XJ0 350 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 PGBD5Q8N414 524 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 NAT16Q8N8M0 369 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 CDYL2Q8N8U2 506 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 GLB1L3Q8NCI6 653 aaPredicted RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 OR6J1Q8NGC5 347 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 OR10A6Q8NH74 314 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 MCFD2Q8NI22 146 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 PSMA8Q8TAA3 256 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 FCGR1BQ92637 280 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 GTF2H4Q92759 462 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 LGALS12Q96DT0 336 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 ERLEC1Q96DZ1 483 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 PPP3R2Q96LZ3 170 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 SERPINB11Q96P15 392 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 KLHL5Q96PQ7 755 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 SIGLEC11Q96RL6 698 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 PKMYT1Q99640 499 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 APOL4Q9BPW4 351 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 RTP3Q9BQQ7 232 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 ACBD6Q9BR61 282 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 ACOT13Q9NPJ3 140 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 POLE4Q9NR33 117 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 NLE1Q9NVX2 485 aaPredicted RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 NUDT4Q9NZJ9 180 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 GALPQ9UBC7 116 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 HECAQ9UBI9 543 aaPredicted RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 EIF2B4Q9UI10 523 aaKnown RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 VPS9D1Q9Y2B5 631 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 RBMX2Q9Y388 322 aaKnown RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 POLR3HQ9Y535 204 aaPredicted RBP7.17□□□□□ -1.26
USP48-206ENST00000464577 PCDHB14Q9Y5E9 798 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 ARL5AQ9Y689 179 aa7.17□□□□□ -1.26
USP48-206ENST00000464577 TRBV5-3A0A0A0MS03 114 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 ILVBLA1L0T0 632 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 PABPN1LA6NDY0 278 aaKnown RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 AGAP5A6NIR3 686 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 EFCAB9A8MZ26 197 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 BTN3A1O00481 513 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ENPP3O14638 875 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 CREG1O75629 220 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 FKBP9O95302 570 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ZBTB7AO95365 584 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 TSPAN12O95859 305 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 FTH1P02794 183 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 HAPLN1P10915 354 aaPredicted RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 SMPD1P17405 629 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 EFNA1P20827 205 aaPredicted RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 FMO3P31513 532 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 PBX3P40426 434 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 HTR6P50406 440 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ZNF140P52738 457 aaPredicted RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 HK3P52790 923 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 LSM3P62310 102 aaKnown RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 IL10RBQ08334 325 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 MAD2L1Q13257 205 aaPredicted RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 PCBP2Q15366 365 aaKnown RBP eCLIP7.16□□□□□ -1.26
USP48-206ENST00000464577 NR6A1Q15406 480 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ZNF404Q494X3 552 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 PIK3R6Q5UE93 754 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 LETMD1Q6P1Q0 360 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 PNCKQ6P2M8 343 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 PRR23CQ6ZRP0 262 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 DET1Q7L5Y6 550 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 NANOGNBQ7Z5D8 188 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 GPSM1Q86YR5 675 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 MSRB3Q8IXL7 192 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ABI1Q8IZP0 508 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 HS6ST3Q8IZP7 471 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 CARNMT1Q8N4J0 409 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 OR13C4Q8NGS5 318 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 BLOC1S5Q8TDH9 187 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 SLC38A4Q969I6 547 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ZHX1-C8orf76Q96EF9 292 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 CDKN2AIPNLQ96HQ2 116 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 GPR21Q99679 349 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 CLSTN3Q9BQT9 956 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 THUMPD3Q9BV44 507 aaKnown RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 ZYG11BQ9C0D3 744 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 NXF2Q9GZY0 626 aaKnown RBP7.16□□□□□ -1.26
USP48-206ENST00000464577 EXD2Q9NVH0 621 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 ASIC5Q9NY37 505 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 NPAP1Q9NZP6 1156 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 OPTCQ9UBM4 332 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 FBXO10Q9UK96 956 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 UTS2RQ9UKP6 389 aa7.16□□□□□ -1.26
USP48-206ENST00000464577 TIMM13Q9Y5L4 95 aaPredicted RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms