RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 LUZP4Q9P127 313 aa21.96■■□□□ 1.11
USP4-208ENST00000464168 CCDC66A2RUB6 948 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 A6NL46 340 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 TCP11X1B4DZS4 312 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 BTN3A1O00481 513 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 DPM1O60762 260 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 TPM1P09493 284 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 RALBP11234 206 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 CYP2A7P20853 494 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 PTCHD3Q3KNS1 767 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 BBS12Q6ZW61 710 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 MED25Q71SY5 747 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 CCDC50Q8IVM0 306 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 NXPE1Q8N323 547 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 RBMXL3Q8N7X1 1067 aaKnown RBP21.95■■□□□ 1.1
USP4-208ENST00000464168 TMEM102Q8N9M5 508 aaPredicted RBP21.95■■□□□ 1.1
USP4-208ENST00000464168 GLIS1Q8NBF1 620 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 OR13C4Q8NGS5 318 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 FERD3LQ96RJ6 166 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 FAM96AQ9H5X1 160 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 CRLS1Q9UJA2 301 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 SERTAD3Q9UJW9 196 aa21.95■■□□□ 1.1
USP4-208ENST00000464168 CREBBPQ92793 2442 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 C17orf113A0A1B0GUU1 675 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 H7C0C1 242 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 ATP1B2P14415 290 aaPredicted RBP21.94■■□□□ 1.1
USP4-208ENST00000464168 ATP5OP48047 213 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 LMAN1P49257 510 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 ZNF658BQ4V348 819 aaPredicted RBP21.94■■□□□ 1.1
USP4-208ENST00000464168 PHC3Q8NDX5 983 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 ULK4Q96C45 1275 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 TRAPPC9Q96Q05 1148 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 COPS8Q99627 209 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 OR52A5Q9H2C5 316 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 TFB2MQ9H5Q4 396 aaKnown RBP21.94■■□□□ 1.1
USP4-208ENST00000464168 SLAMF7Q9NQ25 335 aa21.94■■□□□ 1.1
USP4-208ENST00000464168 CUEDC1Q9NWM3 386 aaPredicted RBP21.94■■□□□ 1.1
USP4-208ENST00000464168 APOC4-APOC2K7ER74 178 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 APOC2P02655 101 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 ZNF140P52738 457 aaPredicted RBP21.93■■□□□ 1.1
USP4-208ENST00000464168 NCF4Q15080 339 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 EIF2S3LQ2VIR3 472 aaKnown RBP21.93■■□□□ 1.1
USP4-208ENST00000464168 SLC6A19Q695T7 634 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 ITPRIPL1Q6GPH6 555 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 HPS6Q86YV9 775 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 KRT35Q92764 455 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 SMAD5Q99717 465 aaKnown RBP21.93■■□□□ 1.1
USP4-208ENST00000464168 KLHL25Q9H0H3 589 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 COG4Q9H9E3 785 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 GPR83Q9NYM4 423 aa21.93■■□□□ 1.1
USP4-208ENST00000464168 G3BP2Q9UN86 482 aaKnown RBP21.93■■□□□ 1.1
USP4-208ENST00000464168 AAR2Q9Y312 384 aaKnown RBP21.93■■□□□ 1.1
USP4-208ENST00000464168 CELSR2Q9HCU4 2923 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 ZNF749O43361 778 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 CRTAMO95727 393 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 PVRP15151 417 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 PSMB4P28070 264 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 PDHA2P29803 388 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 TMPRSS15P98073 1019 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 MRPL49Q13405 166 aaKnown RBP21.92■■□□□ 1.1
USP4-208ENST00000464168 ATP1A4Q13733 1029 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 ZNF385CQ66K41 422 aaPredicted RBP21.92■■□□□ 1.1
USP4-208ENST00000464168 DENND5AQ6IQ26 1287 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 CDHR3Q6ZTQ4 885 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 SNX20Q7Z614 316 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 ADGRF3Q8IZF5 1079 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 OR52E1Q8NGJ3 308 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 HEXDCQ8WVB3 486 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 PNPLA2Q96AD5 504 aa21.92■■□□□ 1.1
USP4-208ENST00000464168 RBM41Q96IZ5 413 aaKnown RBP21.92■■□□□ 1.1
USP4-208ENST00000464168 DPH2Q9BQC3 489 aaPredicted RBP21.92■■□□□ 1.1
USP4-208ENST00000464168 IGLV3-16A0A075B6K0 115 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 CFAP99D6REC4 459 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 E7EQ34 232 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 CCL22O00626 93 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 MAP3K7O43318 606 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 ITGALP20701 1170 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 MAGEA1P43355 309 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 CD151P48509 253 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 CDKN1CP49918 316 aaPredicted RBP21.91■■□□□ 1.1
USP4-208ENST00000464168 RRADP55042 308 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 ANKRD20A2Q5SQ80 823 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 ANKRD20A1Q5TYW2 823 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 ANKRD20A3Q5VUR7 823 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 SARM1Q6SZW1 724 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 MICALCLQ6ZW33 695 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 AMIGO1Q86WK6 493 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 C19orf43Q9BQ61 176 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 XKR8Q9H6D3 395 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 MVB12BQ9H7P6 319 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 CASS4Q9NQ75 786 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 ZDHHC3Q9NYG2 299 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.91■■□□□ 1.1
USP4-208ENST00000464168 PCSK5Q92824 1860 aa21.91■■□□□ 1.1
USP4-208ENST00000464168 CRYBG3Q68DQ2 2970 aa21.9■■□□□ 1.1
USP4-208ENST00000464168 C2orf74A8MZ97 194 aa21.9■■□□□ 1.1
USP4-208ENST00000464168 IFRD1O00458 451 aaPredicted RBP21.9■■□□□ 1.1
USP4-208ENST00000464168 LDB2O43679 373 aa21.9■■□□□ 1.1
USP4-208ENST00000464168 KLF7O75840 302 aaPredicted RBP21.9■■□□□ 1.1
USP4-208ENST00000464168 VARSP26640 1264 aaKnown RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms