RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 MYEOVQ96EZ4 313 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 HHIPL1Q96JK4 782 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 CORO1BQ9BR76 489 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 TDRD1Q9BXT4 1180 aaKnown RBP12.23□□□□□ -0.45
HDAC4-208ENST00000463007 C6orf62Q9GZU0 229 aaPredicted RBP12.23□□□□□ -0.45
HDAC4-208ENST00000463007 FARSBQ9NSD9 589 aaKnown RBP12.23□□□□□ -0.45
HDAC4-208ENST00000463007 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.23□□□□□ -0.45
HDAC4-208ENST00000463007 PAK1IP1Q9NWT1 392 aaPredicted RBP12.23□□□□□ -0.45
HDAC4-208ENST00000463007 TAS2R13Q9NYV9 303 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 GNPTGQ9UJJ9 305 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 PCDHGC4Q9Y5F7 938 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 TANC1Q9C0D5 1861 aa12.23□□□□□ -0.45
HDAC4-208ENST00000463007 A0A0D9SEW6 157 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 PSMD11O00231 422 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 SLC7A4O43246 635 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CNOT3O75175 753 aaKnown RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 NDUFS2O75306 463 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 PAPSS2O95340 614 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 DLGAP3O95886 979 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 EFEMP2O95967 443 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ANXA6P08133 673 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ATXN1LP0C7T5 689 aaKnown RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 PFKLP17858 780 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CCDC92Q53HC0 331 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 LETMD1Q6P1Q0 360 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 FRA10AC1Q70Z53 315 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 HID1Q8IV36 788 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CLIP4Q8N3C7 705 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CHDHQ8NE62 594 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CAPSLQ8WWF8 208 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 IGSF8Q969P0 613 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 LINGO1Q96FE5 620 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 BARD1Q99728 777 aaKnown RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 FBXO44Q9H4M3 255 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ACTR8Q9H981 624 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 MARCH5Q9NX47 278 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 AFF4Q9UHB7 1163 aaKnown RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 GPC6Q9Y625 555 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 C16orf96A6NNT2 1141 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 SEC14L2O76054 403 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 TMBIM6P55061 237 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 SEMG2Q02383 582 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ACVR1Q04771 509 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 DMPKQ09013 629 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 MTA1Q13330 715 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 NFE2Q16621 373 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 C5orf22Q49AR2 442 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 RSPO2Q6UXX9 243 aaPredicted RBP12.22□□□□□ -0.45
HDAC4-208ENST00000463007 GPRIN3Q6ZVF9 776 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 SLC47A1Q96FL8 570 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CGREF1Q99674 301 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ZBED2Q9BTP6 218 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ZYG11BQ9C0D3 744 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 HMG20AQ9NP66 347 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 AIG1Q9NVV5 245 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 COMMD8Q9NX08 183 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 HACD3Q9P035 362 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 KIAA1671Q9BY89 1806 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 LOC285095A0A1B0GVY8 99 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CYP4F2P78329 520 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 CYP4F3Q08477 520 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 RAPSNQ13702 412 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 INAVAQ3KP66 663 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 ALG1LQ6GMV1 187 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 GPSM1Q86YR5 675 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 PIANPQ8IYJ0 282 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 RORBQ92753 470 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 DACH2Q96NX9 599 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 EGFL8Q99944 293 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 MFSD1Q9H3U5 465 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 PDFQ9HBH1 243 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 SEPT3Q9UH03 358 aa12.22□□□□□ -0.45
HDAC4-208ENST00000463007 hCG_2039718K7EN88 272 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 ZNF701M0R085 212 aaPredicted RBP12.21□□□□□ -0.45
HDAC4-208ENST00000463007 TBX1O43435 398 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 COL6A1P12109 1028 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 FDXRP22570 491 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 EPHA2P29317 976 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 NR4A2P43354 598 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 TBX4P57082 545 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 ERVPABLB-1P60509 514 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 EMX1Q04741 257 aaPredicted RBP12.21□□□□□ -0.45
HDAC4-208ENST00000463007 CYP20A1Q6UW02 462 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 Q6ZSR9 355 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 MICU2Q8IYU8 434 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 PNPT1Q8TCS8 783 aaKnown RBP12.21□□□□□ -0.45
HDAC4-208ENST00000463007 ADAMTS16Q8TE57 1224 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 FUBP1Q96AE4 644 aaKnown RBP12.21□□□□□ -0.45
HDAC4-208ENST00000463007 CDKN2AIPNLQ96HQ2 116 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 SPATA17Q96L03 361 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 DOK1Q99704 481 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 MRGBPQ9NV56 204 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 FAM8A1Q9UBU6 413 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 ATP11BQ9Y2G3 1177 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 PRG3Q9Y2Y8 225 aaPredicted RBP12.21□□□□□ -0.45
HDAC4-208ENST00000463007 SPO11Q9Y5K1 396 aa12.21□□□□□ -0.45
HDAC4-208ENST00000463007 LOC100130705A0A1B0GUX0 176 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 UPK1AO00322 258 aa12.21□□□□□ -0.46
HDAC4-208ENST00000463007 LSM1O15116 133 aaKnown RBP12.21□□□□□ -0.46
HDAC4-208ENST00000463007 ANGPTL1O95841 491 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms