RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KCNE2Q9Y6J6 123 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ZNFX1Q9P2E3 1918 aaKnown RBP11.43□□□□□ -0.58
NPHP4-204ENST00000460696 TNFRSF10BO14763 440 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ADAM12O43184 909 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 FTH1P02794 183 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ELFN1P0C7U0 828 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 MYCLP1P12525 358 aaPredicted RBP11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ARNTP27540 789 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 SLC6A4P31645 630 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 KCNC1P48547 511 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 GALK1P51570 392 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 RPS14P62263 151 aaKnown RBP11.43□□□□□ -0.58
NPHP4-204ENST00000460696 TUBB3Q13509 450 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 RAB30Q15771 203 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 TRIM16LQ309B1 348 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 SPANXN4Q5MJ08 99 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 OGFRL1Q5TC84 451 aaPredicted RBP11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ERMP1Q7Z2K6 904 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 FEM1AQ9BSK4 669 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ARNT2Q9HBZ2 717 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 INTS7Q9NVH2 962 aaKnown RBP11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ADPRHL2Q9NX46 363 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 PHF24Q9UPV7 400 aa11.43□□□□□ -0.58
NPHP4-204ENST00000460696 ATAD5Q96QE3 1844 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 XYLBO75191 536 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 UMPSP11172 480 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CSTF3Q12996 717 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 KLHDC10Q6PID8 442 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CRTC3Q6UUV7 619 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 METTL3Q86U44 580 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 RAVER1Q8IY67 606 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 PGBD5Q8N414 524 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 SLC39A13Q96H72 371 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 WRAP53Q9BUR4 548 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 TRPC4Q9UBN4 977 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 RNF11Q9Y3C5 154 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 GMPPBQ9Y5P6 360 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 GRM6O15303 877 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 INPPL1O15357 1258 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 HTRA2O43464 458 aaPredicted RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 MAN1A2O60476 641 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 FGF18O76093 207 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 C1QAP02745 245 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 COL6A1P12109 1028 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 GPR1P46091 355 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CAP1Q01518 475 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 ARMC3Q5W041 872 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 NANOGP8Q6NSW7 305 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 Q6ZVU0 165 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CHST15Q7LFX5 561 aaPredicted RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 MFSD6LQ8IWD5 586 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CLP1Q92989 425 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 FUBP1Q96AE4 644 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 REXO5Q96IC2 774 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 FBXL20Q96IG2 436 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 NSMCE3Q96MG7 304 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 SUV39H2Q9H5I1 410 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 NANOGQ9H9S0 305 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 RASSF1Q9NS23 344 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CHCHD3Q9NX63 227 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 GMPR2Q9P2T1 348 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 TRIP12Q14669 1992 aaPredicted RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 TBC1D3BA6NDS4 549 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 NME4O00746 187 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 STK19P49842 368 aaPredicted RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 HTR6P50406 440 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CASP9P55211 416 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 C21orf59P57076 290 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 NFKB2Q00653 900 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CYP4F3Q08477 520 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 LAPTM5Q13571 262 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 TMPRSS11BQ86T26 416 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 OR2AP1Q8NGE2 309 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 SH3RF2Q8TEC5 729 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 NELL1Q92832 810 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 IGSF21Q96ID5 467 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 PLEKHG4BQ96PX9 1271 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 APOL4Q9BPW4 351 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 OSBPL6Q9BZF3 934 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 ZCCHC2Q9C0B9 1178 aaKnown RBP11.42□□□□□ -0.58
NPHP4-204ENST00000460696 SLC22A14Q9Y267 594 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 SQORQ9Y6N5 450 aa11.42□□□□□ -0.58
NPHP4-204ENST00000460696 CXCR6O00574 342 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 KPNA5O15131 536 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 POP4O95707 220 aaKnown RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 TRBC1P01850 177 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 VARSP26640 1264 aaKnown RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 TTKP33981 857 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 TPGS2Q68CL5 300 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 MBOAT1Q6ZNC8 495 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 BNIPLQ7Z465 357 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 ZC3H7AQ8IWR0 971 aaKnown RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 SETD9Q8NE22 299 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 ATL1Q8WXF7 558 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 PEX13Q92968 403 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 TOP1MTQ969P6 601 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 BIRC7Q96CA5 298 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 BOCQ9BWV1 1114 aa11.41□□□□□ -0.58
NPHP4-204ENST00000460696 NOL6Q9H6R4 1146 aaKnown RBP11.41□□□□□ -0.58
NPHP4-204ENST00000460696 SGK2Q9HBY8 427 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms