RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 BUD31P41223 144 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 BDKRB1P46663 353 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 RPS21P63220 83 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SLC7A9P82251 487 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 IL5RAQ01344 420 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 TRNP1Q6NT89 227 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 TMEM135Q86UB9 458 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 KBTBD6Q86V97 674 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 FITM2Q8N6M3 262 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CNTD1Q8N815 330 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SHKBP1Q8TBC3 707 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 EXOSC8Q96B26 276 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 LENG8Q96PV6 779 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 RANBP9Q96S59 729 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 C8orf33Q9H7E9 229 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SEMA3GQ9NS98 782 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 NENFQ9UMX5 172 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 KLHL20Q9Y2M5 609 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 DRGXA6NNA5 263 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 LIN7AO14910 233 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ITM2AO43736 263 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GSNP06396 782 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ARSAP15289 507 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF8P17098 575 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SLC6A2P23975 617 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 IL4RP24394 825 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 IVDP26440 423 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 NTSR1P30989 418 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CD68P34810 354 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SLC26A3P40879 764 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SLC18A1P54219 525 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 STXBP1P61764 594 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 NFKB2Q00653 900 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CHRDL2Q6WN34 429 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 TXNDC5Q8NBS9 432 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 WDR48Q8TAF3 677 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 KCNN1Q92952 543 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SLC22A18Q96BI1 424 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MYCBPQ99417 103 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ZBP1Q9H171 429 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MTMR10Q9NXD2 777 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GALPQ9UBC7 116 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SLC22A14Q9Y267 594 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 LINC01553A4QN01 128 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 H3BN98 237 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MAN2B1O00754 1011 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 TSPAN6O43657 245 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SMNDC1O75940 238 aaKnown RBP eCLIP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 TOP3BO95985 862 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CHRM1P11229 460 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 PRPS2P11908 318 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GSSP48637 474 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 PLA2G16P53816 162 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 COPZ1P61923 177 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CREB5Q02930 508 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 STX4Q12846 297 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 SEMA3AQ14563 771 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MBTPS1Q14703 1052 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 USP39Q53GS9 565 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 PRAMEF14Q5SWL7 426 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 PRAMEF13Q5VWM6 474 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CAPRIN2Q6IMN6 1127 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 IYDQ6PHW0 289 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GSTCDQ8NEC7 633 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GLYATL1Q969I3 302 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 KIAA1191Q96A73 305 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF778Q96MU6 729 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GSDMCQ9BYG8 508 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 TBX21Q9UL17 535 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CA14Q9ULX7 337 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MAGEA13PA6NCF6 341 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 H0YGN5 161 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ENTPD5O75356 428 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 AP2A2O94973 939 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MSX2P35548 267 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 PREPP48147 710 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MRPS35P82673 323 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 PON2Q15165 354 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 ZDHHC14Q8IZN3 488 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CPXM2Q8N436 756 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CHST14Q8NCH0 376 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 MGME1Q9BQP7 344 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 RTP3Q9BQQ7 232 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 DNMT3BQ9UBC3 853 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 GPN3Q9UHW5 284 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 FBXW2Q9UKT8 454 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 CYP8B1Q9UNU6 501 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 RUVBL1Q9Y265 456 aaKnown RBP7.27□□□□□ -1.25
SYNE1-213ENST00000448038 NFS1Q9Y697 457 aa7.27□□□□□ -1.25
SYNE1-213ENST00000448038 WASH4PA8MWX3 477 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SLC28A2O43868 658 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 MYOGP15173 224 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 DNAJB1P25685 340 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 NOS3P29474 1203 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 IFNGR2P38484 337 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 LEPRP48357 1165 aaKnown RBP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 CCR8P51685 355 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 SLBPQ14493 270 aaKnown RBP eCLIP7.26□□□□□ -1.25
SYNE1-213ENST00000448038 AMZ1Q400G9 498 aa7.26□□□□□ -1.25
SYNE1-213ENST00000448038 PAOXQ6QHF9 649 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms