RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 EPS8Q12929 822 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ZNF846Q147U1 533 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 CYP2A13Q16696 494 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 C6orf141Q5SZD1 244 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 HECTD3Q5T447 861 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 DUS1LQ6P1R4 473 aaKnown RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 SYT12Q8IV01 421 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ZDHHC21Q8IVQ6 265 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 CCDC103Q8IW40 242 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 PROKR1Q8TCW9 393 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ATG10Q9H0Y0 220 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MAGEH1Q9H213 219 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 DDX28Q9NUL7 540 aaKnown RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.67□□□□□ -0.54
MSH6-204ENST00000445503 NLE1Q9NVX2 485 aaPredicted RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 NUDT4Q9NZJ9 180 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 VAPAQ9P0L0 249 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 IKZF3Q9UKT9 509 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ASB1Q9Y576 335 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 LOC730098B7Z3J9 87 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 MITFO75030 526 aaPredicted RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 INMTO95050 263 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 PIM1P11309 404 aaPredicted RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 HTR1EP28566 365 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 BCL2L1Q07817 233 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 SYT16Q17RD7 645 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 LRRC73Q5JTD7 316 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 DOK6Q6PKX4 331 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 SETD9Q8NE22 299 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 ZNF420Q8TAQ5 688 aaPredicted RBP11.67□□□□□ -0.54
MSH6-204ENST00000445503 APOL4Q9BPW4 351 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 POLE4Q9NR33 117 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 USE1Q9NZ43 259 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 WDR81Q562E7 1941 aa11.67□□□□□ -0.54
MSH6-204ENST00000445503 NUP214P35658 2090 aaPredicted RBP11.66□□□□□ -0.54
MSH6-204ENST00000445503 LOC100130705A0A1B0GUX0 176 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PGRP06401 933 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 MMP2P08253 660 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 IL12AP29459 219 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 S100A5P33763 92 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 OR1D2P34982 312 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 VBP1P61758 197 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 EMX2Q04743 252 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 VEPH1Q14D04 833 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 NECAB2Q7Z6G3 386 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 ZHX1-C8orf76Q96EF9 292 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 MED8Q96G25 268 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 MS4A4AQ96JQ5 239 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PTPN18Q99952 460 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 FUNDC2Q9BWH2 189 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 BBS2Q9BXC9 721 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 TDRD1Q9BXT4 1180 aaKnown RBP11.66□□□□□ -0.54
MSH6-204ENST00000445503 REEP1Q9H902 201 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 IMPAD1Q9NX62 359 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 SARDHQ9UL12 918 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PCDHGA8Q9Y5G5 932 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 TBKBP1A7MCY6 615 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 SLC28A1O00337 649 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 CACNG3O60359 315 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 GLUD1P00367 558 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 ESR1P03372 595 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 ANXA5P08758 320 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 COX7A2P14406 83 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 ALOX12P18054 663 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 TRIM32Q13049 653 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PDCD4Q53EL6 469 aaKnown RBP11.66□□□□□ -0.54
MSH6-204ENST00000445503 TMEM236Q5W0B7 351 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 ZFAND4Q86XD8 727 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 FAM86B1Q8N7N1 296 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 MDGA1Q8NFP4 955 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 STON2Q8WXE9 905 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 TNKS2Q9H2K2 1166 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 LOC285095A0A1B0GVY8 99 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 GNG14A0A1W2PPG7 69 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 RGS5O15539 181 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 WDR47O94967 919 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PTGER3P43115 390 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PLA2G16P53816 162 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 CD47Q08722 323 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 SKIV2LQ15477 1246 aaKnown RBP11.66□□□□□ -0.54
MSH6-204ENST00000445503 HEATR4Q86WZ0 1026 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 AADATQ8N5Z0 425 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 ZFYVE1Q9HBF4 777 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 FAM118AQ9NWS6 357 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 PCDHGA11Q9Y5H2 935 aa11.66□□□□□ -0.54
MSH6-204ENST00000445503 TRIM43BA6NCK2 446 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 STK16O75716 305 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 GJB5O95377 273 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ELNP15502 786 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 GATMP50440 423 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 SMAD3P84022 425 aaKnown RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 TOP3AQ13472 1001 aaPredicted RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 NPTX1Q15818 432 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ANKRD26P1Q6NSI1 321 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 TBC1D15Q8TC07 691 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ABHD8Q96I13 439 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 KRT84Q9NSB2 600 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 SPASTQ9UBP0 616 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 GNPTGQ9UJJ9 305 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ARIH1Q9Y4X5 557 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms