RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 BEST1O76090 585 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 WISP3O95389 354 aaPredicted RBP8.43□□□□□ -1.06
HPS4-206ENST00000439453 CYBBP04839 570 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 FYNP06241 537 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 ANXA6P08133 673 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 GEMP55040 296 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 NCS1P62166 190 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 RNF19BQ6ZMZ0 732 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 RAB44Q7Z6P3 723 aaPredicted RBP8.43□□□□□ -1.06
HPS4-206ENST00000439453 P2RY8Q86VZ1 359 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 GALNT13Q8IUC8 556 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 ABI1Q8IZP0 508 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 HS3ST5Q8IZT8 346 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 ZNF558Q96NG5 402 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 ZNF300Q96RE9 604 aaPredicted RBP8.43□□□□□ -1.06
HPS4-206ENST00000439453 DUSP16Q9BY84 665 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 TRIT1Q9H3H1 467 aaKnown RBP8.43□□□□□ -1.06
HPS4-206ENST00000439453 DSN1Q9H410 356 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 PRDM6Q9NQX0 595 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 ENTPD7Q9NQZ7 604 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 AIG1Q9NVV5 245 aa8.43□□□□□ -1.06
HPS4-206ENST00000439453 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP8.43□□□□□ -1.06
HPS4-206ENST00000439453 DENND4CQ5VZ89 1909 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 LOC100130705A0A1B0GUX0 176 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SYCE1LA8MT33 242 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 M0QX08 132 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CLDN5O00501 218 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DYRK3O43781 588 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SLC22A3O75751 556 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 KCNK2O95069 426 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 NDST3O95803 873 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DLGAP3O95886 979 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 FOSL2P15408 326 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 FSHRP23945 695 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 MAP2K4P45985 399 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CLCNKBP51801 687 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 POLR2JP52435 117 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 TUSC3Q13454 348 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 C9orf57Q5W0N0 161 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 PIM3Q86V86 326 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 RYBPQ8N488 228 aaPredicted RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 OR52K2Q8NGK3 314 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 MCOLN3Q8TDD5 553 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 ASPSCR1Q9BZE9 553 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 PRKD2Q9BZL6 878 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 NEK6Q9HC98 313 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 USE1Q9NZ43 259 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 INTS6Q9UL03 887 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 PCDHGB1Q9Y5G3 927 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DOCK6Q96HP0 2047 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 PATJQ8NI35 1801 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 FAM92AA1XBS5 289 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CASTOR2A6NHX0 329 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 HIDE1A8MVS5 230 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 TMEM189-UBE2V1I3L0A0 370 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DFFAO00273 331 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 XPNPEP2O43895 674 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CNTN5O94779 1100 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CCDC159P0C7I6 412 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 ACVR2AP27037 513 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CASP3P42574 277 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 PPP2R2BQ00005 443 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 ZNF691Q5VV52 312 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DDX53Q86TM3 631 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 LRRC49Q8IUZ0 686 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 HID1Q8IV36 788 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 ELMOD1Q8N336 334 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 POC5Q8NA72 575 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SH3RF2Q8TEC5 729 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 ISG20Q96AZ6 181 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 ZNF419Q96HQ0 510 aaPredicted RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 RBM4BQ9BQ04 359 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 CLSTN3Q9BQT9 956 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 RBM4Q9BWF3 364 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 FSD1LQ9BXM9 530 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 GPR62Q9BZJ7 368 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SLIRPQ9GZT3 109 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 LMAN2LQ9H0V9 348 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SMOC2Q9H3U7 446 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 POLR3BQ9NW08 1133 aaPredicted RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 COMMD8Q9NX08 183 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 ERVK-18Q9QC07 812 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DNAJB9Q9UBS3 223 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 OR12D3Q9UGF7 316 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 DERAQ9Y315 318 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 GUCY1B2O75343 617 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 GLP2RO95838 553 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SLC26A3P40879 764 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 UBE3AQ05086 875 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 HYAL1Q12794 435 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 GRIK2Q13002 908 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 PFKFB4Q16877 469 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 USP43Q70EL4 1123 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 PRSS48Q7RTY5 328 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 CARS2Q9HA77 564 aaKnown RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 DDIT4Q9NX09 232 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 SPG21Q9NZD8 308 aa8.42□□□□□ -1.06
HPS4-206ENST00000439453 EVLQ9UI08 416 aaPredicted RBP8.42□□□□□ -1.06
HPS4-206ENST00000439453 KATNA1O75449 491 aa8.41□□□□□ -1.06
HPS4-206ENST00000439453 CRCPO75575 148 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms