RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 NFKB2Q00653 900 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 LIPMQ5VYY2 423 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 PDZD3Q86UT5 571 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 LRRC8CQ8TDW0 803 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 DLG3Q92796 817 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 SKA1Q96BD8 255 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 ZC3H10Q96K80 434 aaKnown RBP22.49■■□□□ 1.19
CPSF4-204ENST00000436336 OSGEPL1Q9H4B0 414 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 PARVBQ9HBI1 364 aa22.49■■□□□ 1.19
CPSF4-204ENST00000436336 NEMP2A6NFY4 417 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 VILLO15195 856 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 KLK8O60259 260 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 IPO13O94829 963 aaKnown RBP22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CYP2A7P20853 494 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 BGNP21810 368 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 IDSP22304 550 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 ACADLP28330 430 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 AFF3P51826 1226 aaKnown RBP22.48■■□□□ 1.19
CPSF4-204ENST00000436336 ASPHQ12797 758 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 LAYNQ6UX15 382 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 ZBTB44Q8NCP5 570 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 TRIM54Q9BYV2 358 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 TMEM168Q9H0V1 697 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 MANSC1Q9H8J5 431 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 UTP6Q9NYH9 597 aaKnown RBP22.48■■□□□ 1.19
CPSF4-204ENST00000436336 SCAMP1O15126 338 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 FFAR2O15552 330 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CATP04040 527 aaKnown RBP22.48■■□□□ 1.19
CPSF4-204ENST00000436336 SLC35G4P0C7Q5 338 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 FGF3P11487 239 aaPredicted RBP22.48■■□□□ 1.19
CPSF4-204ENST00000436336 GFAPP14136 432 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 DNAJB13P59910 316 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CTBSQ01459 385 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CHI3L2Q15782 390 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 PHKG1Q16816 387 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 RGS9BPQ6ZS82 235 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CEP68Q76N32 757 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 FBXO39Q8N4B4 442 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CFAP61Q8NHU2 1237 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 ZNF75CPQ92670 426 aaPredicted RBP22.48■■□□□ 1.19
CPSF4-204ENST00000436336 CD274Q9NZQ7 290 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 PDE10AQ9Y233 779 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 ST14Q9Y5Y6 855 aa22.48■■□□□ 1.19
CPSF4-204ENST00000436336 FAM86C2PA6NEL3 165 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 PRR5-ARHGAP8B1AHC4 643 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 IFRD1O00458 451 aaPredicted RBP22.47■■□□□ 1.19
CPSF4-204ENST00000436336 KLF11O14901 512 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 HIST1H2AGP0C0S8 130 aaPredicted RBP22.47■■□□□ 1.19
CPSF4-204ENST00000436336 HIST1H2ADP20671 130 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 LSP1P33241 339 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 RPIAP49247 311 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 NXPH1P58417 271 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 UNC5DQ6UXZ4 953 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 SPATS2Q86XZ4 545 aaKnown RBP22.47■■□□□ 1.19
CPSF4-204ENST00000436336 PHACTR4Q8IZ21 702 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 PDPRQ8NCN5 879 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 PPP1R14CQ8TAE6 165 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 MCOLN3Q8TDD5 553 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 HIST1H2AHQ96KK5 128 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 HIST1H2AJQ99878 128 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 H2AFJQ9BTM1 129 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 ZDHHC5Q9C0B5 715 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 WWP1Q9H0M0 922 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 C11orf16Q9NQ32 467 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 NCKIPSDQ9NZQ3 722 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 PSMD13Q9UNM6 376 aa22.47■■□□□ 1.19
CPSF4-204ENST00000436336 A0A1B0GTW7 788 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 PABPN1LA6NDY0 278 aaKnown RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 SNX2O60749 519 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 H2AFYO75367 372 aaKnown RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 S100BP04271 92 aaPredicted RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 GNSP15586 552 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 RPL10P27635 214 aaKnown RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 MAP4P27816 1152 aaKnown RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 CDKL1Q00532 357 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 TEAD4Q15561 434 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 PFKFB4Q16877 469 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 CDKL4Q5MAI5 379 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 ATG16L1Q676U5 607 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 CAPRIN2Q6IMN6 1127 aaKnown RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 PTGR2Q8N8N7 351 aaPredicted RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 FBXO15Q8NCQ5 510 aaPredicted RBP22.46■■□□□ 1.19
CPSF4-204ENST00000436336 PHF21BQ96EK2 531 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 SUSD2Q9UGT4 822 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 KLF15Q9UIH9 416 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 PCDHGA2Q9Y5H1 932 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 TMEM131Q92545 1883 aa22.46■■□□□ 1.19
CPSF4-204ENST00000436336 NCF1BA6NI72 391 aaPredicted RBP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 NCF1CA8MVU1 366 aaPredicted RBP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 SHOX2O60902 331 aaPredicted RBP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 NCF1P14598 390 aaPredicted RBP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 CSNK1EP49674 416 aaKnown RBP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 NUBP1P53384 320 aa22.45■■□□□ 1.19
CPSF4-204ENST00000436336 ALDH18A1P54886 795 aaKnown RBP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 AP1S2P56377 157 aa22.45■■□□□ 1.19
CPSF4-204ENST00000436336 C21orf59P57076 290 aa22.45■■□□□ 1.19
CPSF4-204ENST00000436336 CBX1P83916 185 aa22.45■■□□□ 1.19
CPSF4-204ENST00000436336 ILF3Q12906 894 aaKnown RBP eCLIP22.45■■□□□ 1.19
CPSF4-204ENST00000436336 ZNF542PQ5EBM4 170 aa22.45■■□□□ 1.19
CPSF4-204ENST00000436336 RAB44Q7Z6P3 723 aaPredicted RBP22.45■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms