RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 UBXN4Q92575 508 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 ZNF501Q96CX3 271 aaPredicted RBP12.64□□□□□ -0.39
VRK3-203ENST00000424804 STAMBPL1Q96FJ0 436 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 PDLIM2Q96JY6 352 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 PBKQ96KB5 322 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 DNAJC1Q96KC8 554 aaKnown RBP12.64□□□□□ -0.39
VRK3-203ENST00000424804 LINC00615Q96LM1 132 aaPredicted RBP12.64□□□□□ -0.39
VRK3-203ENST00000424804 NRTNQ99748 197 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 ZCCHC2Q9C0B9 1178 aaKnown RBP12.64□□□□□ -0.39
VRK3-203ENST00000424804 WWP1Q9H0M0 922 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 FEZ2Q9UHY8 353 aaPredicted RBP12.64□□□□□ -0.39
VRK3-203ENST00000424804 LNPEPQ9UIQ6 1025 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 FER1L5A0AVI2 2057 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 PIKFYVEQ9Y2I7 2098 aa12.64□□□□□ -0.39
VRK3-203ENST00000424804 RP1L1Q8IWN7 2480 aaPredicted RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 CCDC88CQ9P219 2028 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 CDC14CA4D256 554 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 MGAT4DA6NG13 374 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 DNAJB5O75953 348 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 NTRK1P04629 796 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 VCLP18206 1134 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 ITGALP20701 1170 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 HADHAP40939 763 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 GRIA1P42261 906 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 KPNA2P52292 529 aaKnown RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 PMS2P54278 862 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 RPS18P62269 152 aaKnown RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 CDH17Q12864 832 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 KLRB1Q12918 225 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 TUBB3Q13509 450 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 SEMA5AQ13591 1074 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 BCL7AQ4VC05 210 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 FNBP1LQ5T0N5 605 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 PRAMEF17Q5VTA0 474 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 TAS2R42Q7RTR8 314 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 KLHDC8BQ8IXV7 354 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 PRELID2Q8N945 189 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 SIDT2Q8NBJ9 832 aaKnown RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 OR2L2Q8NH16 312 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 MAGOHBQ96A72 148 aaKnown RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 DCUN1D1Q96GG9 259 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 ZNF514Q96K75 400 aaPredicted RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 OSBPL9Q96SU4 736 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 ACTL8Q9H568 366 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 ARNT2Q9HBZ2 717 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 MLXIPLQ9NP71 852 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 FGF21Q9NSA1 209 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 SLC24A2Q9UI40 661 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 KCND3Q9UK17 655 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 TTC7AQ9ULT0 858 aaPredicted RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 PYCARDQ9ULZ3 195 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 POLHQ9Y253 713 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 DRG1Q9Y295 367 aaKnown RBP12.63□□□□□ -0.39
VRK3-203ENST00000424804 ZKSCAN5Q9Y2L8 839 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 ICE1Q9Y2F5 2266 aa12.63□□□□□ -0.39
VRK3-203ENST00000424804 PRRC2CQ9Y520 2896 aaKnown RBP12.62□□□□□ -0.39
VRK3-203ENST00000424804 PIPSLA2A3N6 862 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 ERI2A8K979 691 aaKnown RBP12.62□□□□□ -0.39
VRK3-203ENST00000424804 C21orf140B9A014 251 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 PGRMC1O00264 195 aaKnown RBP12.62□□□□□ -0.39
VRK3-203ENST00000424804 LDB2O43679 373 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 MT-ND3P03897 115 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 CAPN1P07384 714 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 PRSS56P0CW18 603 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 HALP42357 657 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 ZNF140P52738 457 aaPredicted RBP12.62□□□□□ -0.39
VRK3-203ENST00000424804 SESN2P58004 480 aaPredicted RBP12.62□□□□□ -0.39
VRK3-203ENST00000424804 GNG11P61952 73 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 GPS2Q13227 327 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 IL10RAQ13651 578 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 UGT8Q16880 541 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 ZNF789Q5FWF6 425 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 BPHLQ86WA6 291 aaPredicted RBP12.62□□□□□ -0.39
VRK3-203ENST00000424804 KMT5CQ86Y97 462 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 ADAMTS17Q8TE56 1095 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 COG1Q8WTW3 980 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 ZFPM2Q8WW38 1151 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 RMDN2Q96LZ7 410 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 CD180Q99467 661 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 TWSG1Q9GZX9 223 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 KIR3DX1Q9H7L2 352 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 PDE7BQ9NP56 450 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 HOMER3Q9NSC5 361 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 HRASLS2Q9NWW9 162 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 RARRES3Q9UL19 164 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 PCDHB3Q9Y5E6 796 aa12.62□□□□□ -0.39
VRK3-203ENST00000424804 SPTBN1Q01082 2364 aaKnown RBP12.61□□□□□ -0.39
VRK3-203ENST00000424804 OR6C74A6NCV1 312 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 TLCD2A6NGC4 264 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 ZNF185O15231 689 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 CCNYL3P0C7X3 344 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 RALBP11234 206 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 PTPN4P29074 926 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 ARCN1P48444 511 aaKnown RBP12.61□□□□□ -0.39
VRK3-203ENST00000424804 CDKN1CP49918 316 aaPredicted RBP12.61□□□□□ -0.39
VRK3-203ENST00000424804 MLLT10P55197 1068 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 ACY1Q03154 408 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 GPS1Q13098 491 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 GPR19Q15760 415 aa12.61□□□□□ -0.39
VRK3-203ENST00000424804 PLEKHS1Q5SXH7 462 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms