RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 ARL15Q9NXU5 204 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 WWOXQ9NZC7 414 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 ADAMTS6Q9UKP5 1117 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 ACSL5Q9ULC5 683 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 CDYLQ9Y232 598 aa16.76■□□□□ 0.27
CCDC28B-202ENST00000421922 ZFC3H1O60293 1989 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 CACNA1IQ9P0X4 2223 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 STX16-NPEPL1H3BU86 382 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 STX16O14662 325 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 RASGRP1O95267 797 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 RPN2P04844 631 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 ANXA5P08758 320 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 TROVE2P10155 538 aaKnown RBP eCLIP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 BCKDHBP21953 392 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 CD38P28907 300 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 KCNC1P48547 511 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 ALDH18A1P54886 795 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 SRP54P61011 504 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 ABCE1P61221 599 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 NAA20P61599 178 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 HERVK_113P63132 956 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 RCN2Q14257 317 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 HID1Q8IV36 788 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 TMEFF1Q8IYR6 380 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 TCAIMQ8N3R3 496 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 ASB11Q8WXH4 323 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 OR1E3Q8WZA6 343 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 SKA1Q96BD8 255 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 SCARF2Q96GP6 870 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 ZNF317Q96PQ6 595 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 GATA5Q9BWX5 397 aaPredicted RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 SLC12A9Q9BXP2 914 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 ERVK-6Q9BXR3 956 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 TM7SF3Q9NS93 570 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 KCNK6Q9Y257 313 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 TNPO3Q9Y5L0 923 aaKnown RBP16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 THADAQ6YHU6 1953 aa16.75■□□□□ 0.27
CCDC28B-202ENST00000421922 PDZK1P1A8MUH7 402 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 NDUFAB1O14561 156 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 NPHS1O60500 1241 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 EDF1O60869 148 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 SUPT7LO94864 414 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 TNFP01375 233 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 IMPDH1P20839 514 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 IDSP22304 550 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 PDHA2P29803 388 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 SERPINB5P36952 375 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 RPIAP49247 311 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 AP1S2P56377 157 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 RACK1P63244 317 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 DMPKQ09013 629 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 LRP8Q14114 963 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 PPP1R3AQ16821 1122 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 SULT1C3Q6IMI6 304 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 FAM83HQ6ZRV2 1179 aaPredicted RBP16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 ARMCX6Q7L4S7 300 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 PDZD3Q86UT5 571 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 DTWD2Q8NBA8 298 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 MAGEC3Q8TD91 643 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 BCAS4Q8TDM0 211 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 TSACCQ96A04 125 aaPredicted RBP16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 GRAMD1AQ96CP6 724 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 TMEM237Q96Q45 408 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 EML4Q9HC35 981 aaKnown RBP16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 SLCO1B3Q9NPD5 702 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 SLC23A2Q9UGH3 650 aa16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 PCYT1BQ9Y5K3 369 aaPredicted RBP16.74■□□□□ 0.27
CCDC28B-202ENST00000421922 ZNF318Q5VUA4 2279 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 PSIP1O75475 530 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 SNUPNO95149 360 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 MATN4O95460 622 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 FAM107AO95990 144 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 EEF1DP29692 281 aaKnown RBP16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 BLKP51451 505 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 CDKL1Q00532 357 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 NHLH1Q02575 133 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 OVGP1Q12889 678 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 SETDB1Q15047 1291 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 PHKG1Q16816 387 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 ALG11Q2TAA5 492 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 ZNF658BQ4V348 819 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 CDKL4Q5MAI5 379 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 ZNF678Q5SXM1 525 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 METRNLQ641Q3 311 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 ANKS6Q68DC2 871 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 UNC5DQ6UXZ4 953 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 AFAP1L2Q8N4X5 818 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 MFSD2AQ8NA29 543 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 PDPRQ8NCN5 879 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 L3HYPDHQ96EM0 354 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 CNDP1Q96KN2 507 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 C7orf26Q96N11 449 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 CCT8L2Q96SF2 557 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 DUSP15Q9H1R2 295 aaPredicted RBP16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 PSMD13Q9UNM6 376 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 PDE10AQ9Y233 779 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 ANGPTL3Q9Y5C1 460 aa16.73■□□□□ 0.27
CCDC28B-202ENST00000421922 LRP4O75096 1905 aa16.72■□□□□ 0.27
CCDC28B-202ENST00000421922 GFYI3L273 518 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms