RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TPM4P67936 248 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 PRKAA1Q13131 559 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 MPP3Q13368 585 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 MSLNQ13421 630 aaPredicted RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 BRD3Q15059 726 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 NCF4Q15080 339 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 ZNF658BQ4V348 819 aaPredicted RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 BCL7AQ4VC05 210 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 ODF2Q5BJF6 829 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 LRRC38Q5VT99 294 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 ZDHHC20Q5W0Z9 365 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 ZNF385CQ66K41 422 aaPredicted RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 VSIG1Q86XK7 387 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 FAM20CQ8IXL6 584 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 ADGRF3Q8IZF5 1079 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 OR8K5Q8NH50 307 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 DTX3LQ8TDB6 740 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 KRT35Q92764 455 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 P3H4Q92791 437 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 PNPLA2Q96AD5 504 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 RBM41Q96IZ5 413 aaKnown RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 LINC00615Q96LM1 132 aaPredicted RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 LRFN5Q96NI6 719 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 QKIQ96PU8 341 aaKnown RBP eCLIP7.85□□□□□ -1.15
VIM-202ENST00000421459 SMAD5Q99717 465 aaKnown RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 HGH1Q9BTY7 390 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 SLC7A5P2Q9GIP4 190 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 OR52A5Q9H2C5 316 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 NHEJ1Q9H9Q4 299 aaPredicted RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 C1GALT1Q9NS00 363 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 SMOXQ9NWM0 555 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 CUEDC1Q9NWM3 386 aaPredicted RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 DDX56Q9NY93 547 aaKnown RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 SPHK1Q9NYA1 384 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 HACD3Q9P035 362 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 DHCR7Q9UBM7 475 aaKnown RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 CRLS1Q9UJA2 301 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 CDYLQ9Y232 598 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 PTRH2Q9Y3E5 179 aaKnown RBP7.85□□□□□ -1.15
VIM-202ENST00000421459 CSAG2Q9Y5P2 127 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 ALG6Q9Y672 507 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 COLEC10Q9Y6Z7 277 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 LRBAP50851 2863 aa7.85□□□□□ -1.15
VIM-202ENST00000421459 WIPF3A6NGB9 483 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 C2orf81A6NN90 581 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 E7EQ34 232 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 GOLGA6L19H0YKK7 550 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 H3BMH7 237 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 H7C0C1 242 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 ATP1B2P14415 290 aaPredicted RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 TPH1P17752 444 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 PSMB4P28070 264 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 TNNT3P45378 269 aaPredicted RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 ATP5OP48047 213 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 GLRBP48167 497 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 PRLHRP49683 370 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 TFDP2Q14188 446 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 TAF1AQ15573 450 aaPredicted RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 CRB2Q5IJ48 1285 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 DENND5AQ6IQ26 1287 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 RANBP10Q6VN20 620 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 MED25Q71SY5 747 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 MAMDC2Q7Z304 686 aaPredicted RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 MRGPREQ86SM8 312 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 CUZD1Q86UP6 607 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 AMIGO1Q86WK6 493 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 RHOT2Q8IXI1 618 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 NXPE1Q8N323 547 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 CLDN19Q8N6F1 224 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 TMEM102Q8N9M5 508 aaPredicted RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 ACVR1CQ8NER5 493 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 OR5AR1Q8NGP9 310 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 HM13Q8TCT9 377 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 ZFPM2Q8WW38 1151 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 DCUN1D1Q96GG9 259 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 SGSM3Q96HU1 749 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 CCM2Q9BSQ5 444 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 FSD1LQ9BXM9 530 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 PITPNM3Q9BZ71 974 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 GBA3Q9H227 469 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 ZNF552Q9H707 407 aaPredicted RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 COG4Q9H9E3 785 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 FANCEQ9HB96 536 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 ABHD10Q9NUJ1 306 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 PIH1D1Q9NWS0 290 aaKnown RBP7.84□□□□□ -1.15
VIM-202ENST00000421459 ACTR10Q9NZ32 417 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.84□□□□□ -1.15
VIM-202ENST00000421459 CIDEBQ9UHD4 219 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 LCMT1Q9UIC8 334 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 SERTAD3Q9UJW9 196 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 PLAGL1Q9UM63 463 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 ICKQ9UPZ9 632 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 KLHL20Q9Y2M5 609 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 PCDHGB7Q9Y5F8 929 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.84□□□□□ -1.15
VIM-202ENST00000421459 PRSS21Q9Y6M0 314 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 AKAP9Q99996 3911 aa7.84□□□□□ -1.15
VIM-202ENST00000421459 CCDC78A2IDD5 438 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 ANKUB1A6NFN9 424 aa7.83□□□□□ -1.16
VIM-202ENST00000421459 AGAP14A8MT82 685 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms