RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ULK4Q96C45 1275 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 FCRL4Q96PJ5 515 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 CCM2Q9BSQ5 444 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 GPR87Q9BY21 358 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 MFRPQ9BY79 579 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 ING2Q9H160 280 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 OR52A5Q9H2C5 316 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 ZDHHC3Q9NYG2 299 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 BTRCQ9Y297 605 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 R3HDM2Q9Y2K5 976 aaKnown RBP11.24□□□□□ -0.61
USP4-204ENST00000416417 EPN1Q9Y6I3 576 aaPredicted RBP11.24□□□□□ -0.61
USP4-204ENST00000416417 PRSS21Q9Y6M0 314 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 MAST4O15021 2626 aa11.24□□□□□ -0.61
USP4-204ENST00000416417 UTP20O75691 2785 aaKnown RBP11.23□□□□□ -0.61
USP4-204ENST00000416417 TCRBV7S2A1N4TA0A589 114 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 GRID2IPA4D2P6 1211 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 MEN1O00255 615 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 ZNF185O15231 689 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 HCRTR1O43613 425 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 STK10O94804 968 aaKnown RBP11.23□□□□□ -0.61
USP4-204ENST00000416417 CTSBP07858 339 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 ACRV1P26436 265 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 NDUFS1P28331 727 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 GDF10P55107 478 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 ITGA1P56199 1179 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 FOXL2P58012 376 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 DBN1Q16643 649 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 DEFB110Q30KQ9 67 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 PRR30Q53SZ7 412 aaPredicted RBP11.23□□□□□ -0.61
USP4-204ENST00000416417 ZNF789Q5FWF6 425 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 SARM1Q6SZW1 724 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 SYVN1Q86TM6 617 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 BPHLQ86WA6 291 aaPredicted RBP11.23□□□□□ -0.61
USP4-204ENST00000416417 APLFQ8IW19 511 aaPredicted RBP11.23□□□□□ -0.61
USP4-204ENST00000416417 TMEM151BQ8IW70 566 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 DSELQ8IZU8 1212 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 LMNTD1Q8N9Z9 388 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 ZFPM2Q8WW38 1151 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 TRAPPC9Q96Q05 1148 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 SLC25A23Q9BV35 468 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 ACSS2Q9NR19 701 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 PCMTD2Q9NV79 361 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 PLAGL1Q9UM63 463 aa11.23□□□□□ -0.61
USP4-204ENST00000416417 PCSK5Q92824 1860 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 BLACEA4D250 179 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CLEC18AA5D8T8 446 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 TTLL8A6PVC2 850 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CFAP99D6REC4 459 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 MASP2O00187 686 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 FTCDO95954 541 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 KLK3P07288 261 aaPredicted RBP11.22□□□□□ -0.61
USP4-204ENST00000416417 CAPN1P07384 714 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CYP2A7P20853 494 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 GNLYP22749 145 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 RORAP35398 523 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 HADHAP40939 763 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 PGDP52209 483 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CCDC38Q502W7 563 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 KCTD11Q693B1 232 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 FAM198BQ6UWH4 519 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CLEC18BQ6UXF7 455 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 ARHGEF18Q6ZSZ5 1173 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CDHR3Q6ZTQ4 885 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 FAM20CQ8IXL6 584 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 SYTL1Q8IYJ3 562 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 ADGRF3Q8IZF5 1079 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 LRRC57Q8N9N7 239 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CLEC18CQ8NCF0 446 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 OR5AR1Q8NGP9 310 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 CPT1BQ92523 772 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 FERMT1Q9BQL6 677 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 ACTR5Q9H9F9 607 aaPredicted RBP11.22□□□□□ -0.61
USP4-204ENST00000416417 FAM60AQ9NP50 221 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 C1GALT1Q9NS00 363 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 NLE1Q9NVX2 485 aaPredicted RBP11.22□□□□□ -0.61
USP4-204ENST00000416417 ACTR10Q9NZ32 417 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 SMARCAL1Q9NZC9 954 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 SNX7Q9UNH6 387 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 ICKQ9UPZ9 632 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 HEBP2Q9Y5Z4 205 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 PTPN13Q12923 2485 aa11.22□□□□□ -0.61
USP4-204ENST00000416417 IGLV3-16A0A075B6K0 115 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 TRBV5-4A0A0C4DH59 114 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 IFRD1O00458 451 aaPredicted RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 TJP3O95049 919 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 TPBGLP0DKB5 382 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 PTPN7P35236 360 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 ZNF75DP51815 510 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 CSE1LP55060 971 aaKnown RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 BOP1Q14137 746 aaKnown RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 ZIC1Q15915 447 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 C1orf189Q5VU69 101 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 IZUMO3Q5VZ72 239 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 ZNF517Q6ZMY9 492 aaPredicted RBP11.21□□□□□ -0.61
USP4-204ENST00000416417 AMIGO1Q86WK6 493 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 FAM26EQ8N5C1 309 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 ZBTB2Q8N680 514 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 ADAMTS17Q8TE56 1095 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 THAP4Q8WY91 577 aa11.21□□□□□ -0.61
USP4-204ENST00000416417 TFGQ92734 400 aaPredicted RBP11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms