RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 SCAMP4Q969E2 229 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 TMIGD2Q96BF3 282 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 SDCCAG3Q96C92 435 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 FAR2Q96K12 515 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 ISCA1Q9BUE6 129 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 KRTAP9-8Q9BYQ0 159 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 SLA2Q9H6Q3 261 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 COPS7BQ9H9Q2 264 aaPredicted RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 SIAEQ9HAT2 523 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 CCDC177Q9NQR7 707 aaPredicted RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 OLAHQ9NV23 265 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 PKD2L2Q9NZM6 624 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 COL20A1Q9P218 1284 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 TBC1D14Q9P2M4 693 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 UBA2Q9UBT2 640 aaPredicted RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 KCNN3Q9UGI6 736 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 XPO7Q9UIA9 1087 aaKnown RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 ATPIF1Q9UII2 106 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 PSME2Q9UL46 239 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 PCDHA12Q9UN75 941 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 ZFR2Q9UPR6 939 aaKnown RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 EIF3LQ9Y262 564 aaKnown RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 PLLPQ9Y342 182 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 RBMX2Q9Y388 322 aaKnown RBP5.4□□□□□ -1.54
CLK1-202ENST00000409403 RNF11Q9Y3C5 154 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 TESMINQ9Y4I5 508 aa5.4□□□□□ -1.54
CLK1-202ENST00000409403 PTPRSQ13332 1948 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 A0A1W2PPW3 197 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 E7ESA3 106 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 H0YC42 278 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 J3QRK9 145 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 PSMD11O00231 422 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TAF4O00268 1085 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 PRKAB2O43741 272 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 GPC4O75487 556 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 AKAP3O75969 853 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ITGB1P05556 798 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 BPGMP07738 259 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CLTBP09497 229 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 COX4I1P13073 169 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ZNF26P17031 533 aaPredicted RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 CYP2B6P20813 491 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 IMPDH1P20839 514 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TGM1P22735 817 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 MYF6P23409 242 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 GLRA2P23416 452 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 SLC6A2P23975 617 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CCNCP24863 283 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CNTFP26441 200 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ADSSP30520 456 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 HPCAL1P37235 193 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TUFMP49411 452 aaKnown RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 SERPINB9P50453 376 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ERFP50548 548 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ARSEP51690 589 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ZNF135P52742 658 aaPredicted RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 TPD52P55327 224 aaPredicted RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 P2RX3P56373 397 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 MRPS22P82650 360 aaKnown RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 CDKL1Q00532 357 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 BNC1Q01954 994 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 HHEXQ03014 270 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TLE2Q04725 743 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 RAD51Q06609 339 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TRAF2Q12933 501 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 GPS1Q13098 491 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 RAB32Q13637 225 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 PDK1Q15118 436 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 INSCQ1MX18 579 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 MGAT5BQ3V5L5 792 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CDONQ4KMG0 1287 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CEP55Q53EZ4 464 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 C3orf38Q5JPI3 329 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 DGKKQ5KSL6 1271 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 UBXN11Q5T124 520 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 GPR107Q5VW38 600 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ABRAXAS1Q6UWZ7 409 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 RFPL4BQ6ZWI9 263 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 POLNQ7Z5Q5 900 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 SLC26A11Q86WA9 606 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 HORMAD1Q86X24 394 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CIR1Q86X95 450 aaPredicted RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 DNAAF5Q86Y56 855 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 GALNT13Q8IUC8 556 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 CCDC60Q8IWA6 550 aaPredicted RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 PGAM4Q8N0Y7 254 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 PARP8Q8N3A8 854 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TMIEQ8NEW7 156 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 OR10H5Q8NGA6 315 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 GABPB2Q8TAK5 448 aaPredicted RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 OSCP1Q8WVF1 389 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 ATG4AQ8WYN0 398 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 FBXL8Q96CD0 374 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 VMP1Q96GC9 406 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 MAELQ96JY0 434 aaKnown RBP5.4□□□□□ -1.55
CLK1-202ENST00000409403 SPATA17Q96L03 361 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 TEPSINQ96N21 525 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 COLEC11Q9BWP8 271 aa5.4□□□□□ -1.55
CLK1-202ENST00000409403 NPLQ9BXD5 320 aaPredicted RBP5.4□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms