RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 PLLPQ9Y342 182 aa17.67■□□□□ 0.42
SDC1-203ENST00000403076 TDRD6O60522 2096 aaKnown RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 KHNYNO15037 678 aaKnown RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 PRPF4O43172 522 aaKnown RBP eCLIP17.66■□□□□ 0.422e-7■■□□□ 13.9
SDC1-203ENST00000403076 AQP9O43315 295 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 NR1D1P20393 614 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 MAPK9P45984 424 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 PPP2R2AP63151 447 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 HLA-BQ31612 363 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 UAP1L1Q3KQV9 507 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 CCDC153Q494R4 210 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 FRA10AC1Q70Z53 315 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 UBE2R2Q712K3 238 aaPredicted RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 ADAMTSL2Q86TH1 951 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 ISCA2Q86U28 154 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 ZNF548Q8NEK5 533 aaPredicted RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 FAM46DQ8NEK8 389 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 TFGQ92734 400 aaPredicted RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 EXT2Q93063 718 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 KIAA1191Q96A73 305 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 RMDN2Q96LZ7 410 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 FAM111AQ96PZ2 611 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 MRPL57Q9BQC6 102 aaKnown RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 CPSF2Q9P2I0 782 aaKnown RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 XPR1Q9UBH6 696 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 ASF1AQ9Y294 204 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 CFAP20Q9Y6A4 193 aaKnown RBP17.66■□□□□ 0.42
SDC1-203ENST00000403076 CACNA1HO95180 2353 aa17.66■□□□□ 0.42
SDC1-203ENST00000403076 LRP4O75096 1905 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 PRR19A6NJB7 356 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ARHGAP33O14559 1287 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 DFNA5O60443 496 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 PIAS2O75928 621 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ZWINTO95229 277 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 CATP04040 527 aaKnown RBP17.65■□□□□ 0.42
SDC1-203ENST00000403076 C8GP07360 202 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 RETP07949 1114 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ANXA6P08133 673 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 MAP4P27816 1152 aaKnown RBP17.65■□□□□ 0.42
SDC1-203ENST00000403076 KRT33BQ14525 404 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 OR4D1Q15615 310 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ZNF423Q2M1K9 1284 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 GPSM1Q86YR5 675 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ARMC2Q8NEN0 867 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 MGARPQ8TDB4 240 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ASB11Q8WXH4 323 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 PTERQ96BW5 349 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 C12orf66Q96MD2 445 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 INSM2Q96T92 566 aaPredicted RBP17.65■□□□□ 0.42
SDC1-203ENST00000403076 TRIM54Q9BYV2 358 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ZDHHC5Q9C0B5 715 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 MRPL46Q9H2W6 279 aaKnown RBP17.65■□□□□ 0.42
SDC1-203ENST00000403076 GAREM1Q9H706 876 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 IMP3Q9NV31 184 aaKnown RBP17.65■□□□□ 0.42
SDC1-203ENST00000403076 FAM86C1Q9NVL1 165 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 SLC17A7Q9P2U7 560 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 ADAMTS6Q9UKP5 1117 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 IKZF3Q9UKT9 509 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 WDR37Q9Y2I8 494 aa17.65■□□□□ 0.42
SDC1-203ENST00000403076 CACNA1EQ15878 2313 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 TRBV23OR9-2A0A075B6M9 112 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 TM9SF1O15321 606 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 PLIN3O60664 434 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 MATN4O95460 622 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 F3P13726 295 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 CYP2A7P20853 494 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 ACADLP28330 430 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 RXRGP48443 463 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 ATXN3P54252 364 aaPredicted RBP17.64■□□□□ 0.41
SDC1-203ENST00000403076 IL9RQ01113 521 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 BNIP3Q12983 259 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 MPP2Q14168 576 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 TECRLQ5HYJ1 363 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 CAPRIN2Q6IMN6 1127 aaKnown RBP17.64■□□□□ 0.41
SDC1-203ENST00000403076 TTC23LQ6PF05 361 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 ABRAXAS1Q6UWZ7 409 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 WASH2PQ6VEQ5 465 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 SDR16C5Q8N3Y7 309 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 MCOLN3Q8TDD5 553 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 PAIP2Q9BPZ3 127 aaKnown RBP17.64■□□□□ 0.41
SDC1-203ENST00000403076 GTPBP2Q9BX10 602 aaKnown RBP17.64■□□□□ 0.41
SDC1-203ENST00000403076 WASH6PQ9NQA3 447 aa17.64■□□□□ 0.41
SDC1-203ENST00000403076 UTP6Q9NYH9 597 aaKnown RBP17.64■□□□□ 0.41
SDC1-203ENST00000403076 CCDC189A1A4V9 331 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 SUPT3HB4E1H0 165 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 TK2O00142 265 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 SLC16A5O15375 505 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 YY2O15391 372 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 KERAO60938 352 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 PSIP1O75475 530 aaKnown RBP17.63■□□□□ 0.41
SDC1-203ENST00000403076 SUPT3HO75486 399 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 CER1O95813 267 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 PROCP04070 461 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 RPN2P04844 631 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 HIST1H2AGP0C0S8 130 aaPredicted RBP17.63■□□□□ 0.41
SDC1-203ENST00000403076 SLC2A4P14672 509 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 TAC1P20366 129 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 HIST1H2ADP20671 130 aa17.63■□□□□ 0.41
SDC1-203ENST00000403076 OAS2P29728 719 aaKnown RBP17.63■□□□□ 0.41
SDC1-203ENST00000403076 SP140Q13342 867 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms