RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 PDE12Q6L8Q7 609 aaKnown RBP10.6□□□□□ -0.71
CCDC40-204ENST00000397545 MZT2BQ6NZ67 158 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 ERI1Q8IV48 349 aaKnown RBP10.6□□□□□ -0.71
CCDC40-204ENST00000397545 AQP12AQ8IXF9 295 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 TRPV3Q8NET8 790 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 TMBIM1Q969X1 311 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 Q96MT0 163 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 LRRC3Q9BY71 257 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 KCTD5Q9NXV2 234 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 GTF2IRD1Q9UHL9 959 aa10.6□□□□□ -0.71
CCDC40-204ENST00000397545 RNASEH2AO75792 299 aaKnown RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 BCAS2O75934 225 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 NUDT14O95848 222 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 FABP3P05413 133 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 MAPK9P45984 424 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ARHGAP1Q07960 439 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 CEACAM7Q14002 265 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 IKBKEQ14164 716 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TRIM71Q2Q1W2 868 aaKnown RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 VARS2Q5ST30 1063 aaKnown RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 RNF44Q7L0R7 432 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 C16orf62Q7Z3J2 963 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TRIM74Q86UV6 250 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TRIM73Q86UV7 250 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 IRGQQ8WZA9 623 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 SUSD6Q92537 303 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 NTAN1Q96AB6 310 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 C12orf43Q96C57 262 aaKnown RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 DMRTB1Q96MA1 342 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 COPS4Q9BT78 406 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 MTIF3Q9H2K0 278 aaKnown RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ZNF222Q9UK12 451 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 E7ESA3 106 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 STX11O75558 287 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 RAP2AP10114 183 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 PRG2P13727 222 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ZNF182P17025 639 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 RPS14P62263 151 aaKnown RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TRIM32Q13049 653 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TLR1Q15399 786 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 FBXL22Q6P050 247 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 SERPINA13PQ6UXR4 307 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 CERS6Q6ZMG9 384 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 RAB2BQ8WUD1 216 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 FAM210AQ96ND0 272 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 SGIP1Q9BQI5 828 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 CCDC106Q9BWC9 280 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TMEM39AQ9NV64 488 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 CFAP97Q9P2B7 532 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 PCDHB1Q9Y5F3 818 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 OR6C75A6NL08 312 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 AXIN1O15169 862 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 SCELO95171 688 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 NUDT6P53370 316 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ERVK-8P63133 956 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 CCL14Q16627 93 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ZBED5Q49AG3 693 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 DIRAS2Q96HU8 199 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 RSPH9Q9H1X1 276 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 RMI1Q9H9A7 625 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 POLR3BQ9NW08 1133 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 SEC14L3Q9UDX4 400 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 PSME2Q9UL46 239 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ZNF232Q9UNY5 417 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 ARIH1Q9Y4X5 557 aaPredicted RBP10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TLL2Q9Y6L7 1015 aa10.59□□□□□ -0.71
CCDC40-204ENST00000397545 TULP3O75386 442 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 OPN1SWP03999 348 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 ASGR1P07306 291 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 GJA5P36382 358 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 IL10RBQ08334 325 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 ELP6Q0PNE2 266 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 PLA2G4EQ3MJ16 856 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.58□□□□□ -0.72
CCDC40-204ENST00000397545 C11orf65Q8NCR3 313 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 QRFPRQ96P65 431 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 NPY6RQ99463 290 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 CGREF1Q99674 301 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 KCNS3Q9BQ31 491 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 C1orf109Q9NX04 203 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 MALT1Q9UDY8 824 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 VPS51Q9UID3 782 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 IGKV6-21A0A0C4DH24 114 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 LSM1O15116 133 aaKnown RBP10.58□□□□□ -0.72
CCDC40-204ENST00000397545 MTX2O75431 263 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 ELFN1P0C7U0 828 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 PSMA1P25786 263 aaKnown RBP10.58□□□□□ -0.72
CCDC40-204ENST00000397545 PRKCZQ05513 592 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 CACNG1Q06432 222 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 SIRPB2Q5JXA9 342 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 TIFABQ6ZNK6 161 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 CHSY3Q70JA7 882 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 SLC24A5Q71RS6 500 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 HID1Q8IV36 788 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 SMYD1Q8NB12 490 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 SLC38A2Q96QD8 506 aa10.58□□□□□ -0.72
CCDC40-204ENST00000397545 SMOQ99835 787 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms