RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 DYNC1I2Q13409 638 aaKnown RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ZNHIT3Q15649 155 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 INAVAQ3KP66 663 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ZNF697Q5TEC3 545 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 KIAA1161Q6NSJ0 714 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 IRGCQ6NXR0 463 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 SDR16C5Q8N3Y7 309 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 OXR1Q8N573 874 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 RBM15BQ8NDT2 890 aaKnown RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TRPC4APQ8TEL6 797 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TSC22D3Q99576 134 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 DENND2DQ9H6A0 471 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PIH1D1Q9NWS0 290 aaKnown RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ARMCX1Q9P291 453 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3DA0A087WVF3 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3IA0A087WXS9 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3EA0A087X179 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3KA0A087X1G2 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3FA6NER0 549 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3LB9A6J9 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ATP6V1G2O95670 118 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3HP0C7X1 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ZNF23P17027 643 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 OXTRP30559 389 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ATXN3P54252 364 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 SLC10A2Q12908 348 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 KLF10Q13118 480 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3GQ6DHY5 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3CQ6IPX1 549 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PAQR3Q6TCH7 311 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 SLC41A1Q8IVJ1 513 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TBC1D3Q8IZP1 549 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 DEPDC4Q8N2C3 294 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 C11orf65Q8NCR3 313 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 VN1R2Q8NFZ6 395 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 OR2T12Q8NG77 320 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 NDRG1Q92597 394 aaKnown RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PLEKHA8Q96JA3 519 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 CASD1Q96PB1 797 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 LENG8Q96PV6 779 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 NDNQ99608 321 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 KCTD14Q9BQ13 255 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 KLF16Q9BXK1 252 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 REEP1Q9H902 201 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TRIM39Q9HCM9 518 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PRDM8Q9NQV8 689 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PTPRQQ9UMZ3 2332 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 OR2AG2A6NM03 316 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 NR5A2O00482 541 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 CLDN4O14493 209 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PGRP06401 933 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 RPSAP08865 295 aaKnown RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 HNRNPLP14866 589 aaKnown RBP eCLIP3.33□□□□□ -1.882e-8■■■■■ 55.6
VPS13C-203ENST00000395896 GNSP15586 552 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 MZF1P28698 734 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 MPP1Q00013 466 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 FADDQ13158 208 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 FBXW10Q5XX13 1052 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 TTC33Q6PID6 262 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 RALGPS2Q86X27 583 aaPredicted RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 SNX32Q86XE0 403 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 KHSRPQ92945 711 aaKnown RBP eCLIP3.33□□□□□ -1.882e-7■■■□□ 19.1
VPS13C-203ENST00000395896 SIPA1Q96FS4 1042 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 UBXN10Q96LJ8 280 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 C3orf14Q9HBI5 128 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 VPS29Q9UBQ0 182 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PNMA8CA0A1B0GUJ8 204 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 MPZL2O60487 215 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ZNF217O75362 1048 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 CSPG5O95196 566 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 C6orf89Q6UWU4 347 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 MFSD6LQ8IWD5 586 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 KIF2BQ8N4N8 673 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 C10orf82Q8WW14 230 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PTBP2Q9UKA9 531 aaKnown RBP3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PADI4Q9UM07 663 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 CDH13P55290 713 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PSME3P61289 254 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 PCLAFQ15004 111 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 LYSMD3Q7Z3D4 306 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 ZNF781Q8N8C0 355 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 SLC13A3Q8WWT9 602 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 L3HYPDHQ96EM0 354 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 FBXL12Q9NXK8 326 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 MARK1Q9P0L2 795 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 SNX7Q9UNH6 387 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 DTNAQ9Y4J8 743 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 HCFC2Q9Y5Z7 792 aa3.33□□□□□ -1.88
VPS13C-203ENST00000395896 RNGTTO60942 597 aaKnown RBP3.32□□□□□ -1.88
VPS13C-203ENST00000395896 RPL17P18621 184 aaKnown RBP3.32□□□□□ -1.88
VPS13C-203ENST00000395896 ATP6V1C1P21283 382 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 ATP6V1E1P36543 226 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 RHDQ02161 417 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 BIKQ13323 160 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 NDUFA9Q16795 377 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 TMEM44Q2T9K0 475 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 ERN2Q76MJ5 926 aaKnown RBP3.32□□□□□ -1.88
VPS13C-203ENST00000395896 HID1Q8IV36 788 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 TOR1AIP2Q8NFQ8 470 aa3.32□□□□□ -1.88
VPS13C-203ENST00000395896 CRISPLD2Q9H0B8 497 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms