RNA–Protein interactions for RNA: ENST00000381208.9

RPAIN-202, Transcript of RPA interacting protein, humanhuman

TSL 1 (best) BASIC

Gene RPAIN, Length 1,394 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-202ENST00000381208 REXO2Q9Y3B8 237 aaKnown RBP12.64□□□□□ -0.39
RPAIN-202ENST00000381208 MRPS18BQ9Y676 258 aaKnown RBP12.64□□□□□ -0.39
RPAIN-202ENST00000381208 CDC14CA4D256 554 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 ARHGAP6O43182 974 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 KDM1AO60341 852 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 SCRG1O75711 98 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 TIAF1O95411 115 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 AP2A1O95782 977 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 CDH3P22223 829 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 PTPN4P29074 926 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 KPNA2P52292 529 aaKnown RBP12.63□□□□□ -0.39
RPAIN-202ENST00000381208 TMPRSS15P98073 1019 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 KLRB1Q12918 225 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 KLF1Q13351 362 aaPredicted RBP12.63□□□□□ -0.39
RPAIN-202ENST00000381208 KCNAB1Q14722 419 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 SERPINA9Q86WD7 417 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 FAM71DQ8N9W8 422 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 OR4E2Q8NGC2 313 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 CPT1BQ92523 772 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 ZNF501Q96CX3 271 aaPredicted RBP12.63□□□□□ -0.39
RPAIN-202ENST00000381208 CDKN2AIPNLQ96HQ2 116 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 DNAJC1Q96KC8 554 aaKnown RBP12.63□□□□□ -0.39
RPAIN-202ENST00000381208 FERD3LQ96RJ6 166 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 OR52A5Q9H2C5 316 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 ZNF71Q9NQZ8 489 aaPredicted RBP12.63□□□□□ -0.39
RPAIN-202ENST00000381208 IMPACTQ9P2X3 320 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 FAM8A1Q9UBU6 413 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 FARSAQ9Y285 508 aaKnown RBP12.63□□□□□ -0.39
RPAIN-202ENST00000381208 MAN2B2Q9Y2E5 1009 aa12.63□□□□□ -0.39
RPAIN-202ENST00000381208 SEC16AO15027 2179 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 LIN7AO14910 233 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 FTH1P02794 183 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 POLR2CP19387 275 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 PSMA3P25788 255 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 PPARGP37231 505 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 OLIG2Q13516 323 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 SPARCL1Q14515 664 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 UGT8Q16880 541 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 ATP1A1-AS1Q5TC04 95 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 LYPLAL1Q5VWZ2 237 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 IZUMO3Q5VZ72 239 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 DMRTA1Q5VZB9 504 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 DUS1LQ6P1R4 473 aaKnown RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 ZNF517Q6ZMY9 492 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 TAS2R42Q7RTR8 314 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 RNF10Q8N5U6 811 aaKnown RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 ACRBPQ8NEB7 543 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 SLC35B2Q8TB61 432 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 FAM118BQ9BPY3 351 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 RBSNQ9H1K0 784 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 EPN3Q9H201 632 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 ACTL8Q9H568 366 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 SERTAD3Q9UJW9 196 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 RIMKLBQ9ULI2 386 aa12.62□□□□□ -0.39
RPAIN-202ENST00000381208 ZNF106Q9H2Y7 1883 aaKnown RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 RP1L1Q8IWN7 2480 aaPredicted RBP12.62□□□□□ -0.39
RPAIN-202ENST00000381208 GSAPA4D1B5 854 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 MROH6A6NGR9 719 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 C2orf74A8MZ97 194 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 GOLGA6L6A8MZA4 724 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 PYCARD-AS1I3L0S3 204 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 NTRK1P04629 796 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 HBQ1P09105 142 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 RAB40ALP0C0E4 278 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 PRDX3P30048 256 aaKnown RBP12.61□□□□□ -0.39
RPAIN-202ENST00000381208 FDFT1P37268 417 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 PREPP48147 710 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 CDH17Q12864 832 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 SEMA5AQ13591 1074 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 AADACL2Q6P093 401 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 PACS1Q6VY07 963 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 HOOK3Q86VS8 718 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 AMIGO1Q86WK6 493 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 TEX19Q8NA77 164 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 TFGQ92734 400 aaPredicted RBP12.61□□□□□ -0.39
RPAIN-202ENST00000381208 PEX13Q92968 403 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 MR1Q95460 341 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 HES6Q96HZ4 224 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 C17orf62Q9BQA9 187 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 DPH2Q9BQC3 489 aaPredicted RBP12.61□□□□□ -0.39
RPAIN-202ENST00000381208 PITPNM3Q9BZ71 974 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 TSGA10Q9BZW7 698 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 FAM96AQ9H5X1 160 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 POLG2Q9UHN1 485 aa12.61□□□□□ -0.39
RPAIN-202ENST00000381208 G3BP2Q9UN86 482 aaKnown RBP12.61□□□□□ -0.39
RPAIN-202ENST00000381208 HEATR9A2RTY3 570 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 SLC9B1P1A6NJY1 282 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 DDX3YO15523 660 aaKnown RBP12.6□□□□□ -0.39
RPAIN-202ENST00000381208 METTL18O95568 372 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 OR56A5P0C7T3 313 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 CYP2A7P20853 494 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 MSNP26038 577 aaKnown RBP12.6□□□□□ -0.39
RPAIN-202ENST00000381208 SHMT2P34897 504 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 BOP1Q14137 746 aaKnown RBP12.6□□□□□ -0.39
RPAIN-202ENST00000381208 POU6F1Q14863 301 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 ZNF658BQ4V348 819 aaPredicted RBP12.6□□□□□ -0.39
RPAIN-202ENST00000381208 SEL1L2Q5TEA6 688 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 CERS6Q6ZMG9 384 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 NLRP9Q7RTR0 991 aa12.6□□□□□ -0.39
RPAIN-202ENST00000381208 GAS2L3Q86XJ1 694 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms