RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PTPRSQ13332 1948 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 H3BNH8 94 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SOCS5O75159 536 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 OTCP00480 354 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 C1QCP02747 245 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SLC2A4P14672 509 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 PSMA4P25789 261 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 CA8P35219 290 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 WDR5P61964 334 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 RPL38P63173 70 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SPRED1Q7Z699 444 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 PAPD5Q8NDF8 572 aaKnown RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SEPHS2Q99611 448 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 EGFL8Q99944 293 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 EFHD1Q9BUP0 239 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 PREBQ9HCU5 417 aa13.12□□□□□ -0.31
CCDC3-202ENST00000378839 KIAA1522Q9P206 1035 aaPredicted RBP13.12□□□□□ -0.31
CCDC3-202ENST00000378839 SMIM31A0A1B0GVY4 71 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 H0Y858 1186 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 H3BSA7 217 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 PRAMEF4O60810 478 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 C1SP09871 688 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 DGKAP23743 735 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 PCSK6P29122 969 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 RFC2P35250 354 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 EEFSECP57772 596 aaKnown RBP13.11□□□□□ -0.31
CCDC3-202ENST00000378839 LSAMPQ13449 338 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 INTS11Q5TA45 600 aaKnown RBP13.11□□□□□ -0.31
CCDC3-202ENST00000378839 PRAMEF9Q5VWM5 478 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 LILRA6Q6PI73 481 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 DPY19L3Q6ZPD9 716 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 DET1Q7L5Y6 550 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 FAM47BQ8NA70 645 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 TCEAL4Q96EI5 215 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 FBXL20Q96IG2 436 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 LYSMD1Q96S90 227 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 NTN4Q9HB63 628 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 ZFP14Q9HCL3 533 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 SLC25A37Q9NYZ2 338 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 UTS2RQ9UKP6 389 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 MTX2O75431 263 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 H6PDO95479 791 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 ENO2P09104 434 aaPredicted RBP13.11□□□□□ -0.31
CCDC3-202ENST00000378839 PHC1P78364 1004 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 INPP5AQ14642 412 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 ARHGEF6Q15052 776 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 NKG7Q16617 165 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 MPPE1Q53F39 396 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 RIMKLAQ8IXN7 391 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 RGL4Q8IZJ4 473 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 MFSD2AQ8NA29 543 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 CLHC1Q8NHS4 586 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 DGCR14Q96DF8 476 aaKnown RBP13.11□□□□□ -0.31
CCDC3-202ENST00000378839 SCRN2Q96FV2 425 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 CENPNQ96H22 339 aaPredicted RBP13.11□□□□□ -0.31
CCDC3-202ENST00000378839 ZNF583Q96ND8 569 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 HTATIP2Q9BUP3 242 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 ZBP1Q9H171 429 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 CAAP1Q9H8G2 361 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 KLQ9UEF7 1012 aa13.11□□□□□ -0.31
CCDC3-202ENST00000378839 MAGED1Q9Y5V3 778 aaPredicted RBP13.11□□□□□ -0.31
CCDC3-202ENST00000378839 UPK1AO00322 258 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 EI24O14681 340 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 IGSF6O95976 241 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 JAK1P23458 1154 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 FASP25445 335 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 HTR1EP28566 365 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 GTDC1Q4AE62 458 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SERPINA13PQ6UXR4 307 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SLC22A15Q8IZD6 547 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TOX2Q96NM4 488 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 CGREF1Q99674 301 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 CCT7Q99832 543 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 WWOXQ9NZC7 414 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 SUN2Q9UH99 717 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 HCFC2Q9Y5Z7 792 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 CEPT1Q9Y6K0 416 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 ARNTLO00327 626 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 PFDN1O60925 122 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 IL10P22301 178 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 VARSP26640 1264 aaKnown RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 MPP7Q5T2T1 576 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TMEM215Q68D42 235 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 ITIH5Q86UX2 942 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 CBARPQ8N350 705 aaPredicted RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 PAF1Q8N7H5 531 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 DRAXINQ8NBI3 349 aaPredicted RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TSPAN14Q8NG11 270 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 MRPS31Q92665 395 aaKnown RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 GTF2H4Q92759 462 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 ITFG2Q969R8 447 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 CORO1BQ9BR76 489 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 TMEM39AQ9NV64 488 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 OPTCQ9UBM4 332 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 ZNF490Q9ULM2 529 aaPredicted RBP13.1□□□□□ -0.31
CCDC3-202ENST00000378839 PDE10AQ9Y233 779 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 MANBAO00462 879 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 CCL16O15467 120 aa13.1□□□□□ -0.31
CCDC3-202ENST00000378839 FGF18O76093 207 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms