RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 FAM167BQ9BTA0 163 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 HGH1Q9BTY7 390 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 TUBB2BQ9BVA1 445 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 TSSK1BQ9BXA7 367 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 CCDC86Q9H6F5 360 aaKnown RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 KIR3DX1Q9H7L2 352 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 SAYSD1Q9NPB0 183 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 PPANQ9NQ55 473 aaKnown RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 INTS10Q9NVR2 710 aaKnown RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 SLC24A2Q9UI40 661 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 TSR3Q9UJK0 312 aaKnown RBP13.03□□□□□ -0.32
VPS28-202ENST00000377348 LOXL2Q9Y4K0 774 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 APC2O95996 2303 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 EPG5Q9HCE0 2579 aa13.03□□□□□ -0.32
VPS28-202ENST00000377348 BRINP1O60477 761 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 GPC4O75487 556 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 ESR1P03372 595 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 CAPNS1P04632 268 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 APOA4P06727 396 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 ITIH1P19827 911 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 CHRM3P20309 590 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 ABCG1P45844 678 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 CAPZBP47756 277 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 LEPRP48357 1165 aaKnown RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 ADARP55265 1226 aaKnown RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 GUCY2DQ02846 1103 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 ABRQ12979 859 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 PRKG2Q13237 762 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 TEDDM1Q5T9Z0 273 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 ZNF549Q6P9A3 640 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 WDR74Q6RFH5 385 aaPredicted RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 RAB11FIP2Q7L804 512 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 OTOAQ7RTW8 1153 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 LMNTD2Q8IXW0 634 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 SLC22A15Q8IZD6 547 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 FBXO39Q8N4B4 442 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 C2CD4AQ8NCU7 369 aaPredicted RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 OR52E1Q8NGJ3 308 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 WDR36Q8NI36 951 aaKnown RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 ASZ1Q8WWH4 475 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 GRAMD1AQ96CP6 724 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 PRR11Q96HE9 360 aaPredicted RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 TGM7Q96PF1 710 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 SLC30A3Q99726 388 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 DPYSL5Q9BPU6 564 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 STRADBQ9C0K7 418 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 EPB41L1Q9H4G0 881 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 POLR1BQ9H9Y6 1135 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 DMGDHQ9UI17 866 aaKnown RBP13.02□□□□□ -0.33
VPS28-202ENST00000377348 ASF1AQ9Y294 204 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 HEBP2Q9Y5Z4 205 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 COLEC10Q9Y6Z7 277 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 ZZEF1O43149 2961 aa13.02□□□□□ -0.33
VPS28-202ENST00000377348 USP24Q9UPU5 2620 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 ZFHX4Q86UP3 3567 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 E5RI56 91 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 TMX2-CTNND1H3BSU7 103 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 PLD2O14939 933 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 CAPN5O15484 640 aaPredicted RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 KIF1CO43896 1103 aaKnown RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 NDUFS1P28331 727 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 GABRB3P28472 473 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 ETV5P41161 510 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 LSSP48449 732 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 PLOD1Q02809 727 aaPredicted RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 TMED2Q15363 201 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 IRGCQ6NXR0 463 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 CCDC25Q86WR0 208 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 CNTN4Q8IWV2 1026 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 SIDT2Q8NBJ9 832 aaKnown RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 ACVR1CQ8NER5 493 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 OR4E2Q8NGC2 313 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 CFAP61Q8NHU2 1237 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 PYROXD1Q8WU10 500 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 ZCCHC14Q8WYQ9 949 aaKnown RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 NDNQ99608 321 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 XKR8Q9H6D3 395 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 MVB12BQ9H7P6 319 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 PDP2Q9P2J9 529 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 PISDQ9UG56 409 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 CIDEBQ9UHD4 219 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 PLAGL1Q9UM63 463 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 RUVBL2Q9Y230 463 aaKnown RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 VPS9D1Q9Y2B5 631 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 TDRKHQ9Y2W6 561 aaKnown RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 MED16Q9Y2X0 877 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 NFS1Q9Y697 457 aa13.01□□□□□ -0.33
VPS28-202ENST00000377348 MN1Q10571 1320 aaPredicted RBP13.01□□□□□ -0.33
VPS28-202ENST00000377348 OR6C74A6NCV1 312 aa13□□□□□ -0.33
VPS28-202ENST00000377348 OR5K3A6NET4 321 aa13□□□□□ -0.33
VPS28-202ENST00000377348 H3BMM5 538 aa13□□□□□ -0.33
VPS28-202ENST00000377348 TAF4O00268 1085 aa13□□□□□ -0.33
VPS28-202ENST00000377348 PIAS1O75925 651 aa13□□□□□ -0.33
VPS28-202ENST00000377348 SLCO2B1O94956 709 aa13□□□□□ -0.33
VPS28-202ENST00000377348 TNFSF15O95150 251 aa13□□□□□ -0.33
VPS28-202ENST00000377348 C9P02748 559 aa13□□□□□ -0.33
VPS28-202ENST00000377348 AHSGP02765 367 aa13□□□□□ -0.33
VPS28-202ENST00000377348 TPBGLP0DKB5 382 aa13□□□□□ -0.33
VPS28-202ENST00000377348 CCL4P13236 92 aa13□□□□□ -0.33
VPS28-202ENST00000377348 POLR2CP19387 275 aaPredicted RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms