RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 LOC100130705A0A1B0GUX0 176 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 ILVBLA1L0T0 632 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 AKR1A1P14550 325 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 PTX3P26022 381 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 RPTNQ6XPR3 784 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 CLEC4CQ8WTT0 213 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 TNKS2Q9H2K2 1166 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 KCNN2Q9H2S1 579 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 SH3PXD2BA1X283 911 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 KERAO60938 352 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 MTRF1O75570 445 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 SAGP10523 405 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 NUDT6P53370 316 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 MYBPC1Q00872 1141 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 OGDHQ02218 1023 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 RABL3Q5HYI8 236 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 CHSY3Q70JA7 882 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 IGDCC3Q8IVU1 814 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 C1QTNF1Q9BXJ1 281 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 EQTNQ9NQ60 294 aa19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 SPIN1Q9Y657 262 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-202ENST00000356786 CPSF4LA6NMK7 179 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 FAM189A1O60320 539 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 SLC2A2P11168 524 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 SLC6A4P31645 630 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 DGKQP52824 942 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 TAC4Q86UU9 113 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 SIDT2Q8NBJ9 832 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 ITPAQ9BY32 194 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 NIFKQ9BYG3 293 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 GMIPQ9P107 970 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 MLXQ9UH92 298 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 XPNPEP2O43895 674 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 TUBA1BP68363 451 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 RUNDC3AQ59EK9 446 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 TUBA1AQ71U36 451 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 ASRGL1Q7L266 308 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 DEFB128Q7Z7B8 93 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 SLC51AQ86UW1 340 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 FEM1CQ96JP0 617 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 OR10H1Q9Y4A9 318 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 PCDHGB3Q9Y5G1 929 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 FAM47E-STBD1D6RA91 191 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 ASPAP45381 313 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 AP3S2P59780 193 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 ZC3HC1Q86WB0 502 aaKnown RBP19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 C9orf43Q8TAL5 461 aaPredicted RBP19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 CDCA5Q96FF9 252 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 PDZD7Q9H5P4 517 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 GNAZP19086 355 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 PBX3P40426 434 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 CDH4P55283 916 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 CACNG1Q06432 222 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 DSC3Q14574 896 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 RFKQ969G6 155 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 TMEM74Q96NL1 305 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 FTHL17Q9BXU8 183 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 BCL2L14Q9BZR8 327 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 C3orf14Q9HBI5 128 aa19.22■□□□□ 0.67
CCDC88B-202ENST00000356786 AURKAO14965 403 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 HCN1O60741 890 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 TMEM53Q6P2H8 277 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 CXCL17Q6UXB2 119 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 COLGALT2Q8IYK4 626 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 OR10G2Q8NGC3 310 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 UFD1Q92890 307 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 BIRC7Q96CA5 298 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 IL4I1Q96RQ9 567 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 CCDC106Q9BWC9 280 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 TFB2MQ9H5Q4 396 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 RPF2Q9H7B2 306 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 TRPS1Q9UHF7 1281 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 KAT6AQ92794 2004 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ABHD14A-ACY1A0A1B0GW23 586 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 A6NHS1 94 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 CLDN11O75508 207 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 REM1O75628 298 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 VBP1P61758 197 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 TIFABQ6ZNK6 161 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 OAFQ86UD1 273 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 UROC1Q96N76 676 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 CDK15Q96Q40 435 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 GPR20Q99678 358 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 HNRNPABQ99729 332 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ELL3Q9HB65 397 aaPredicted RBP19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ADAMTSL3P82987 1691 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 DNAJA1P31689 397 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 SRSF11Q05519 484 aaKnown RBP19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ZNF423Q2M1K9 1284 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 KLHL24Q6TFL4 600 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 BRSK1Q8TDC3 778 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ADAMTS15Q8TE58 950 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 HSPB11Q9Y547 144 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 AHSGP02765 367 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 ESR1P03372 595 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 TAF10Q12962 218 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 LAPTM5Q13571 262 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 IDNKQ5T6J7 187 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 PAQR3Q6TCH7 311 aa19.21■□□□□ 0.67
CCDC88B-202ENST00000356786 SIGLEC10Q96LC7 697 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms