RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 KRT87PA6NCN2 255 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 GFYI3L273 518 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 SLC16A5O15375 505 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 ADAM23O75077 832 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 STK16O75716 305 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 GSTM1P09488 218 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 THRAP10827 490 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 PGM1P36871 562 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 SLC25A3Q00325 362 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 CDKL1Q00532 357 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 GSTM4Q03013 218 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 ABRQ12979 859 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 TRAF3Q13114 568 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 TTC31Q49AM3 519 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-202ENST00000339872 BCL7AQ4VC05 210 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 TCHHL1Q5QJ38 904 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-202ENST00000339872 PARP9Q8IXQ6 854 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 HIC2Q96JB3 615 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 EPHX3Q9H6B9 360 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 FBXL12Q9NXK8 326 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 DOCK9Q9BZ29 2069 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 SLC5A10A0PJK1 596 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 PRR23AA6NEV1 266 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 DNTTP04053 509 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 CAPN1P07384 714 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 COL9A1P20849 921 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 CPOXP36551 454 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 GRSF1Q12849 480 aaKnown RBP eCLIP13.1□□□□□ -0.31
HMGB1-202ENST00000339872 CDC16Q13042 620 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 CYLC2Q14093 348 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-202ENST00000339872 SQLEQ14534 574 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 CDKL4Q5MAI5 379 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 SCIMPQ6UWF3 145 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 HEATR4Q86WZ0 1026 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 ARHGAP24Q8N264 748 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 SLC44A3Q8N4M1 653 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 RP9Q8TA86 221 aaKnown RBP13.1□□□□□ -0.31
HMGB1-202ENST00000339872 METTL6Q8TCB7 284 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 MCOLN3Q8TDD5 553 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 GAS2L1Q99501 681 aaPredicted RBP13.1□□□□□ -0.31
HMGB1-202ENST00000339872 TRPV5Q9NQA5 729 aa13.1□□□□□ -0.31
HMGB1-202ENST00000339872 LILRB5O75023 590 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 MATN4O95460 622 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 ALDOCP09972 364 aaKnown RBP13.09□□□□□ -0.31
HMGB1-202ENST00000339872 EPB42P16452 691 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 ZNF8P17098 575 aaPredicted RBP13.09□□□□□ -0.31
HMGB1-202ENST00000339872 DRD1P21728 446 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 GRB7Q14451 532 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 WSCD2Q2TBF2 565 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 METTL2BQ6P1Q9 378 aaKnown RBP13.09□□□□□ -0.31
HMGB1-202ENST00000339872 PNCKQ6P2M8 343 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 DOK6Q6PKX4 331 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 CRTC3Q6UUV7 619 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 MILR1Q7Z6M3 343 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 PACS2Q86VP3 889 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 TCAIMQ8N3R3 496 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 THTPAQ9BU02 230 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 C8orf33Q9H7E9 229 aaPredicted RBP13.09□□□□□ -0.31
HMGB1-202ENST00000339872 MRGBPQ9NV56 204 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 BAIAP2L1Q9UHR4 511 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 TMEM98Q9Y2Y6 226 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 F5P12259 2224 aa13.09□□□□□ -0.31
HMGB1-202ENST00000339872 A0A1W2PQF6 199 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 MBTPS2O43462 519 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 ATP6V1G2O95670 118 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 ASGR2P07307 311 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 HGFP14210 728 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 MAP4P27816 1152 aaKnown RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 PDHA2P29803 388 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 HMOX2P30519 316 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 HNMTP50135 292 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 AP1S2P56377 157 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 STX1BP61266 288 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 FASTKQ14296 549 aaKnown RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 HERC3Q15034 1050 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 CCDC85BQ15834 202 aaPredicted RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 PLA2G4EQ3MJ16 856 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 IER5LQ5T953 404 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 ADAMTSL4Q6UY14 1074 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 GK5Q6ZS86 529 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 TRMT11Q7Z4G4 463 aaKnown RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 CFAP206Q8IYR0 622 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 SLC22A15Q8IZD6 547 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 SNX31Q8N9S9 440 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 OR14C36Q8NHC7 312 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 KCNV2Q8TDN2 545 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 DNASE1L2Q92874 299 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 FOXJ1Q92949 421 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 ZNF514Q96K75 400 aaPredicted RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 RTKNQ9BST9 563 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 MMADHCQ9H3L0 296 aaPredicted RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 SLC32A1Q9H598 525 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 PFDN4Q9NQP4 134 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 GULP1Q9UBP9 304 aa13.08□□□□□ -0.31
HMGB1-202ENST00000339872 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.08□□□□□ -0.31
HMGB1-202ENST00000339872 ARHGEF33A8MVX0 844 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 H3BM21 787 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 PSMD12O00232 456 aaPredicted RBP13.08□□□□□ -0.32
HMGB1-202ENST00000339872 AIM2O14862 343 aa13.08□□□□□ -0.32
HMGB1-202ENST00000339872 VEGFDO43915 354 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms