RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CCDC3Q9BQI4 270 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 EIF2B3Q9NR50 452 aaKnown RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 COMMD3Q9UBI1 195 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 PLCL2Q9UPR0 1127 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 ST14Q9Y5Y6 855 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 RBM47A0AV96 593 aaKnown RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 SYN3O14994 580 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 SLC28A2O43868 658 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 GLDCP23378 1020 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 RHBDF2Q6PJF5 856 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 XKRXQ6PP77 449 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 SLC35B2Q8TB61 432 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 C1QTNF7Q9BXJ2 289 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FAIMQ9NVQ4 179 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 OXSMQ9NWU1 459 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 HMGXB4Q9UGU5 601 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FZD10Q9ULW2 581 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 ZNF510Q9Y2H8 683 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 MYH2Q9UKX2 1941 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FAM86C2PA6NEL3 165 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 HTRA2O43464 458 aaPredicted RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 RPP40O75818 363 aaKnown RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 NDST3O95803 873 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 PEPDP12955 493 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 PKMP14618 531 aaKnown RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 TACR2P21452 398 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 RPL4P36578 427 aaKnown RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 TAS2R41P59536 307 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 MYLK3Q32MK0 819 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 CDCA2Q69YH5 1023 aaPredicted RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 FBXO42Q6P3S6 717 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 CRELD1Q96HD1 420 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FCRL4Q96PJ5 515 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 ZNF347Q96SE7 839 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 OXCT2Q9BYC2 517 aaPredicted RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 SLC25A51Q9H1U9 297 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 DTLQ9NZJ0 730 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 MALT1Q9UDY8 824 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 GRIP1Q9Y3R0 1128 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 YJEFN3A6XGL0 299 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 AURKAO14965 403 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 MATN3O15232 486 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FAM189A1O60320 539 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 CCNB2O95067 398 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 C1RP00736 705 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 PPP2R2BQ00005 443 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 DCST1Q5T197 706 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 BRI3BPQ8WY22 251 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 MINDY3Q9H8M7 445 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 KIAA1522Q9P206 1035 aaPredicted RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 STOX2Q9P2F5 926 aaPredicted RBP11.33□□□□□ -0.6
VPS39-201ENST00000318006 FBXW11Q9UKB1 542 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 KCNE2Q9Y6J6 123 aa11.33□□□□□ -0.6
VPS39-201ENST00000318006 FAM234BA2RU67 622 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 HMGB3O15347 200 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 INMTO95050 263 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 IFNGP01579 166 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 GNAZP19086 355 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 CORO1AP31146 461 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 CDH12P55289 794 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 DPYSL2Q16555 572 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 RFTN2Q52LD8 501 aaPredicted RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 GCNT6Q5T4J0 391 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 SH3PXD2AQ5TCZ1 1133 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 GPR153Q6NV75 609 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 KLHL35Q6PF15 583 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 GLB1L3Q8NCI6 653 aaPredicted RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 OR4K2Q8NGD2 314 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 SLC13A3Q8WWT9 602 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 UFD1Q92890 307 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 PHOX2BQ99453 314 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 POLR2J2Q9GZM3 115 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 NEK6Q9HC98 313 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 GULP1Q9UBP9 304 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 PHF24Q9UPV7 400 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 PRKAB1Q9Y478 270 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 HSPB11Q9Y547 144 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 A0A0J9YVX5 310 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 PLOD2O00469 737 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 OGNP20774 298 aaKnown RBP11.32□□□□□ -0.6
VPS39-201ENST00000318006 CD72P21854 359 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 ASMTP46597 345 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 MTPNP58546 118 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 FUT10Q6P4F1 479 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 TLDC1Q6P9B6 456 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 FAM151BQ6UXP7 276 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 SERPINA13PQ6UXR4 307 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 CLIP4Q8N3C7 705 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 SPATA22Q8NHS9 363 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 CXorf40AQ8TE69 158 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 TMBIM1Q969X1 311 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 MYO19Q96H55 970 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 SLC39A8Q9C0K1 460 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 IGFLR1Q9H665 355 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 FKBP14Q9NWM8 211 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 RDH8Q9NYR8 311 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 NCKAP1Q9Y2A7 1128 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 TCAF1Q9Y4C2 921 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 TESMINQ9Y4I5 508 aa11.32□□□□□ -0.6
VPS39-201ENST00000318006 CHURC1-FNTBB4DL54 471 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms