RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 FAM237AA0A1B0GTK4 181 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CELF2O95319 508 aaKnown RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CYP17A1P05093 508 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 PKMP14618 531 aaKnown RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CD72P21854 359 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CD40LGP29965 261 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CCNFP41002 786 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 GRIA1P42261 906 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 NOMO1Q15155 1222 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 MAPK14Q16539 360 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 GPR158Q5T848 1215 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 GPR153Q6NV75 609 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ASB18Q6ZVZ8 466 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 SLC30A2Q9BRI3 323 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ACP6Q9NPH0 428 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CYP3A7-CYP3A51PA0A087WV96 503 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ANXA8P13928 327 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 F8A1P23610 371 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CYP3A7P24462 503 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CLCN4P51793 760 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 NDUFA9Q16795 377 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 DCLRE1AQ6PJP8 1040 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 STRADAQ7RTN6 431 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ERLEC1Q96DZ1 483 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 LRRC3Q9BY71 257 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 DUSP16Q9BY84 665 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 LHX5Q9H2C1 402 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ASAH2Q9NR71 780 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 UBQLN2Q9UHD9 624 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 EDARQ9UNE0 448 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 COLEC10Q9Y6Z7 277 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TMEM150BA6NC51 233 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CDH1P12830 882 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 XKP51811 444 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 RPA4Q13156 261 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 NADK2Q4G0N4 442 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 IRF2BP2Q7Z5L9 587 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 EXOSC8Q96B26 276 aaKnown RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TBCCD1Q9NVR7 557 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 C14orf166Q9Y224 244 aaKnown RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 GLYATL1P3A0A0U1RQE8 302 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 GABBR2O75899 941 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 SCGB1D2O95969 90 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ASGR1P07306 291 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ADRB2P07550 413 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF20P17024 532 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 NT5EP21589 574 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF267Q14586 743 aaPredicted RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 NPTX1Q15818 432 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 NUP54Q7Z3B4 507 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 SLC44A3Q8N4M1 653 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 DHRS1Q96LJ7 313 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 HTATIP2Q9BUP3 242 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CYTH4Q9UIA0 394 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TIMM22Q9Y584 194 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 PCDHGB2Q9Y5G2 931 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 LHFPL3Q86UP9 236 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 MTMR9Q96QG7 549 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 RIMKLBQ9ULI2 386 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 WASF2Q9Y6W5 498 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 MTHFD1P11586 935 aaKnown RBP13.67□□□□□ -0.22
CSPG4-201ENST00000308508 IL1R1P14778 569 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 CPN2P22792 545 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 S100A10P60903 97 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 HSDL1Q3SXM5 330 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 RGL4Q8IZJ4 473 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 OR2AJ1Q8NGZ0 328 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 TAPBPLQ9BX59 468 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 PCDH18Q9HCL0 1135 aa13.67□□□□□ -0.22
CSPG4-201ENST00000308508 HDCP19113 662 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 GLDCP23378 1020 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RALGPS1Q5JS13 557 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RHBDF2Q6PJF5 856 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 SAMD7Q7Z3H4 446 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 TVP23BQ9NYZ1 205 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RBM47A0AV96 593 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 AP2A1O95782 977 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 GDI2P50395 445 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 ARFRP1Q13795 201 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 SCGB2B2Q4G0G5 96 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 GAD1Q99259 594 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 SLC39A1Q9NY26 324 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 TSPAN1O60635 241 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 DNAJA1P31689 397 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RFWD3Q6PCD5 774 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 PIGWQ7Z7B1 504 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 OR6K6Q8NGW6 343 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 OR8D1Q8WZ84 308 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 EXOC2Q96KP1 924 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 CAMK1GQ96NX5 476 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RIOK2Q9BVS4 552 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 NUSAP1Q9BXS6 441 aaKnown RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 RANBP3Q9H6Z4 567 aaPredicted RBP13.66□□□□□ -0.22
CSPG4-201ENST00000308508 PRORSD1PA6NEY8 169 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 CLDN4O14493 209 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 ZNF366Q8N895 744 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 ASB9Q96DX5 294 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 HSPA12BQ96MM6 686 aa13.66□□□□□ -0.22
CSPG4-201ENST00000308508 IMP3Q9NV31 184 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms