RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 MUSKO15146 869 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CD2P06729 351 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 SPATA31D3P0C874 917 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CTHP32929 405 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 APLP1P51693 650 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CPTPQ5TA50 214 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 MSANTD2Q6P1R3 559 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 SPATA31D4Q6ZUB0 917 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 XAGE5Q8WWM1 108 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 LINGO1Q96FE5 620 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 CNDP2Q96KP4 475 aaKnown RBP11.91□□□□□ -0.5
PCF11-201ENST00000298281 BLOC1S4Q9NUP1 217 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 KCTD5Q9NXV2 234 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 U3KQV3 271 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 COL1A2P08123 1366 aa11.91□□□□□ -0.5
PCF11-201ENST00000298281 UGT2B11O75310 529 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 PTPRAP18433 802 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ATP5A1P25705 553 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 SLC26A5P58743 744 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ELP6Q0PNE2 266 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MTFR2Q6P444 385 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 TRAPPC6BQ86SZ2 158 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 PLEKHA3Q9HB20 300 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 DIDO1Q9BTC0 2240 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 OR5H15A6NDH6 313 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 OR5H14A6NHG9 310 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 OR5H1A6NKK0 313 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 H3BSH0 61 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 TLR5O60602 858 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ZNF3P17036 446 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 GLRA2P23416 452 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CMPK1P30085 196 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MAP2K5Q13163 448 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 PDK3Q15120 406 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 PARP15Q460N3 678 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 RNASEH2BQ5TBB1 312 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 CFAP206Q8IYR0 622 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 FAM83DQ9H4H8 585 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 NCDNQ9UBB6 729 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 TMPRSS11EQ9UL52 423 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 HBS1LQ9Y450 684 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 COMMD3-BMI1R4GMX3 469 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 EML1O00423 815 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 SCO1O75880 301 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 DDNO94850 711 aaPredicted RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 HRGP04196 525 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ENDOUP21128 410 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 TMEM35AQ53FP2 167 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ESCO2Q56NI9 601 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 SLC25A36Q96CQ1 311 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 DUSP16Q9BY84 665 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 GRHL1Q9NZI5 618 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CA5BQ9Y2D0 317 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 PTPRJQ12913 1337 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 GRM6O15303 877 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 SMIM10L2AP0DMW4 78 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 SMIM10L2BP0DMW5 78 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CSTF2P33240 577 aaKnown RBP eCLIP11.9□□□□□ -0.58e-8■■■■■ 29.1
PCF11-201ENST00000298281 CTSKP43235 329 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 PNLIPRP1P54315 467 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MRPS5P82675 430 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 BST1Q10588 318 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CPSF6Q16630 551 aaKnown RBP eCLIP11.9□□□□□ -0.54e-10■■■■■ 36.9
PCF11-201ENST00000298281 CYP27C1Q4G0S4 372 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 DCST1Q5T197 706 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CATSPERGQ6ZRH7 1159 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 TMPPEQ6ZT21 453 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ZMIZ2Q8NF64 920 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CD300LFQ8TDQ1 290 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 SHC3Q92529 594 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MTMR9Q96QG7 549 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 KCNMB3Q9NPA1 279 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 FZD3Q9NPG1 666 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ZDHHC4Q9NPG8 344 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 CENPMQ9NSP4 180 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 DHX15O43143 795 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 FADS2O95864 444 aaKnown RBP11.9□□□□□ -0.5
PCF11-201ENST00000298281 PRLP01236 227 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 HCKP08631 526 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MAGEA3P43357 314 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 HERV-K104P61576 105 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 FAM151BQ6UXP7 276 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 TMEM151BQ8IW70 566 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 KIAA0319LQ8IZA0 1049 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MAB21L3Q8N8X9 362 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 SLC43A3Q8NBI5 491 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 MAF1Q9H063 256 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.9□□□□□ -0.5
PCF11-201ENST00000298281 LMTK2Q8IWU2 1503 aa11.9□□□□□ -0.5
PCF11-201ENST00000298281 ANKRD63C9JTQ0 380 aa11.9□□□□□ -0.51
PCF11-201ENST00000298281 PRMT5O14744 637 aaPredicted RBP11.9□□□□□ -0.51
PCF11-201ENST00000298281 CCL16O15467 120 aa11.9□□□□□ -0.51
PCF11-201ENST00000298281 ATG13O75143 517 aa11.9□□□□□ -0.51
PCF11-201ENST00000298281 MLLT3P42568 568 aaPredicted RBP11.9□□□□□ -0.51
PCF11-201ENST00000298281 RPL6Q02878 288 aaKnown RBP11.9□□□□□ -0.51
PCF11-201ENST00000298281 MAP1SQ66K74 1059 aaPredicted RBP11.9□□□□□ -0.51
PCF11-201ENST00000298281 CXCL17Q6UXB2 119 aa11.9□□□□□ -0.51
PCF11-201ENST00000298281 WRAP53Q9BUR4 548 aaKnown RBP11.9□□□□□ -0.51
PCF11-201ENST00000298281 CCSER2Q9H7U1 834 aa11.9□□□□□ -0.51
PCF11-201ENST00000298281 ZC3H13Q5T200 1668 aaKnown RBP11.9□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms