RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 GPR3P46089 330 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 VSNL1P62760 191 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 PLOD1Q02809 727 aaPredicted RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 CFHR1Q03591 330 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 FOXC1Q12948 553 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 PRKG2Q13237 762 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 KRT33BQ14525 404 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 NAA30Q147X3 362 aaPredicted RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 SLMAPQ14BN4 828 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 HES3Q5TGS1 186 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 TMPRSS9Q7Z410 1059 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 EIF1ADQ8N9N8 165 aaKnown RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 OR5AR1Q8NGP9 310 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 CFAP61Q8NHU2 1237 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 CD200R1Q8TD46 325 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 INPP5DQ92835 1189 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 SH3KBP1Q96B97 665 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 MRRFQ96E11 262 aaKnown RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 STN1Q9H668 368 aaKnown RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 UCK1Q9HA47 277 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 RRAGDQ9NQL2 400 aaPredicted RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 NSMCE4AQ9NXX6 385 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 MTO1Q9Y2Z2 717 aaKnown RBP12.44□□□□□ -0.42
SS18-202ENST00000269138 VWA7Q9Y334 891 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 NFS1Q9Y697 457 aa12.44□□□□□ -0.42
SS18-202ENST00000269138 FAM149AA5PLN7 773 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 VPS26AO75436 327 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 TYRP1P17643 537 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 SPINK2P20155 84 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 SAT1P21673 171 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 MCM3P25205 808 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 PMS2P54278 862 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 CDCP2Q5VXM1 449 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 CPNE9Q8IYJ1 553 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 AVL9Q8NBF6 648 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 UBXN4Q92575 508 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 VPS39Q96JC1 886 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 ELMO2Q96JJ3 720 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 GFM1Q96RP9 751 aaKnown RBP12.43□□□□□ -0.42
SS18-202ENST00000269138 CPNE1Q99829 537 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 NUDT22Q9BRQ3 303 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 HGH1Q9BTY7 390 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.43□□□□□ -0.42
SS18-202ENST00000269138 RHOJQ9H4E5 214 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 ACSS3Q9H6R3 686 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 RDH14Q9HBH5 336 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 OGFRQ9NZT2 677 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 SLC24A2Q9UI40 661 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 ASF1AQ9Y294 204 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 HEBP2Q9Y5Z4 205 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 COLEC10Q9Y6Z7 277 aa12.43□□□□□ -0.42
SS18-202ENST00000269138 SPEGQ15772 3267 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 FAM95CA0A1B0GW59 222 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 MED19A0JLT2 244 aaPredicted RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 LILRA5A6NI73 299 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 MT-CO3P00414 261 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TPBGLP0DKB5 382 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CDK4P11802 303 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 HOXB3P14651 431 aaPredicted RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 FDXRP22570 491 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CSF2RBP32927 897 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PHBP35232 272 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 GP5P40197 560 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TAS2R39P59534 338 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TUBB4BP68371 445 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 KLHL38Q2WGJ6 581 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 FAM45BPQ6NSW5 357 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PAQR3Q6TCH7 311 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CYHR1Q6ZMK1 362 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 RBM12BQ8IXT5 1001 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 FAM45AQ8TCE6 357 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 SKA2Q8WVK7 121 aaPredicted RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 RBBP8Q99708 897 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 FUT8Q9BYC5 575 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 EPB41L4BQ9H329 900 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 KIR3DX1Q9H7L2 352 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 MVB12BQ9H7P6 319 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TAS2R13Q9NYV9 303 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TMEM9Q9P0T7 183 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 KLHL42Q9P2K6 505 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CIDEBQ9UHD4 219 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TRMT6Q9UJA5 497 aaKnown RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 CORO1CQ9ULV4 474 aaPredicted RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 WASF3Q9UPY6 502 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 KRT87PA6NCN2 255 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 D6RAR5 112 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 RIPK2O43353 540 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 UBXN7O94888 489 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PROS1P07225 676 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 MPSTP25325 297 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 ATP5DP30049 168 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PPM1FP49593 454 aaPredicted RBP12.42□□□□□ -0.42
SS18-202ENST00000269138 EPHA4P54764 986 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 SPIDRQ14159 915 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 ZNF460Q14592 562 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 PLCL1Q15111 1095 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TTLL9Q3SXZ7 439 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 CCSMST1Q4G0I0 132 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 GRTP1Q5TC63 336 aa12.42□□□□□ -0.42
SS18-202ENST00000269138 TMEM207Q6UWW9 146 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms