RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 AXIN1O15169 862 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 GLUD1P00367 558 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 IGHA2P01877 340 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 RING1Q06587 406 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 R3HCC1LQ7Z5L2 792 aaKnown RBP20.92■□□□□ 0.94
TRIM28-201ENST00000253024 SPRED1Q7Z699 444 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 TMEM179BQ7Z7N9 219 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 PATL1Q86TB9 770 aaKnown RBP20.92■□□□□ 0.94
TRIM28-201ENST00000253024 PCSK9Q8NBP7 692 aaKnown RBP20.92■□□□□ 0.94
TRIM28-201ENST00000253024 SDCCAG3Q96C92 435 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 ZNF583Q96ND8 569 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 PCDHGA11Q9Y5H2 935 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 A0A1B0GVM2 712 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 XPNPEP2O43895 674 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 PQBP1O60828 265 aaKnown RBP20.92■□□□□ 0.94
TRIM28-201ENST00000253024 BMP10O95393 424 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 CHRNA6Q15825 494 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 ELMSAN1Q6PJG2 1045 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 RGL4Q8IZJ4 473 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 FOXJ1Q92949 421 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 INPP5KQ9BT40 448 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 POPDC3Q9HBV1 291 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 IL37Q9NZH6 218 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 IL17CQ9P0M4 197 aa20.92■□□□□ 0.94
TRIM28-201ENST00000253024 FAM155AB1AL88 458 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 BOLA2-SMG1P6H3BVE0 249 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 STX16O14662 325 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ZNF682O95780 498 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ANXA6P08133 673 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 TACR1P25103 407 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 NAA20P61599 178 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 TRAF3Q13114 568 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 GTF2H3Q13889 308 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 MRPL58Q14197 206 aaKnown RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ADGRF1Q5T601 910 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ANKRD26P1Q6NSI1 321 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 LRRC8DQ7L1W4 858 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 LMNTD1Q8N9Z9 388 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 SLC13A3Q8WWT9 602 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 KCNJ9Q92806 393 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 OR52E6Q96RD3 313 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 BARD1Q99728 777 aaKnown RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 BRINP2Q9C0B6 783 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 SLC25A37Q9NYZ2 338 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 OPTCQ9UBM4 332 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 PADI4Q9UM07 663 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 PCDHGA8Q9Y5G5 932 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 MYO1GB0I1T2 1018 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 H0YJX3 145 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ITPKAP23677 461 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 VAC14Q08AM6 782 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 SIM2Q14190 667 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 AASDHQ4L235 1098 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 PIWIL3Q7Z3Z3 882 aaKnown RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 TNIP2Q8NFZ5 429 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ZNF382Q96SR6 550 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ATG10Q9H0Y0 220 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ARMC7Q9H6L4 198 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 TMEM161AQ9NX61 479 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 TRPM5Q9NZQ8 1165 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 G3V2T6 193 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 VPS4BO75351 444 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ENO2P09104 434 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 FAM43BQ6ZT52 329 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ZDHHC13Q8IUH4 622 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 RHNO1Q9BSD3 238 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 FEM1AQ9BSK4 669 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 BBS2Q9BXC9 721 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 ZFYVE1Q9HBF4 777 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 IL26Q9NPH9 171 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 DLGAP4Q9Y2H0 992 aa20.91■□□□□ 0.94
TRIM28-201ENST00000253024 AOC2O75106 756 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 ULK1O75385 1050 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 BOP1Q14137 746 aaKnown RBP20.9■□□□□ 0.94
TRIM28-201ENST00000253024 FAM98BQ52LJ0 330 aaKnown RBP20.9■□□□□ 0.94
TRIM28-201ENST00000253024 TXNDC11Q6PKC3 985 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 CNIH3Q8TBE1 160 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 ACTR8Q9H981 624 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 PCDH12Q9NPG4 1184 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 MYOFQ9NZM1 2061 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 CHD7Q9P2D1 2997 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 ZBBXA8MT70 800 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 UPK1AO00322 258 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 THRBP10828 461 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 TSTA3Q13630 321 aaPredicted RBP20.9■□□□□ 0.94
TRIM28-201ENST00000253024 PDCD4Q53EL6 469 aaKnown RBP20.9■□□□□ 0.94
TRIM28-201ENST00000253024 ZNF648Q5T619 568 aaPredicted RBP20.9■□□□□ 0.94
TRIM28-201ENST00000253024 BORAQ6PGQ7 559 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 GIPC3Q8TF64 312 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 OSCP1Q8WVF1 389 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 MYO19Q96H55 970 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 CCDC138Q96M89 665 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 TIMMDC1Q9NPL8 285 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 LHX3Q9UBR4 397 aa20.9■□□□□ 0.94
TRIM28-201ENST00000253024 ARIH1Q9Y4X5 557 aaPredicted RBP20.9■□□□□ 0.94
TRIM28-201ENST00000253024 DOCK6Q96HP0 2047 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 PRRG1O14668 218 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 PFDN6O15212 129 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 RAD51BO15315 384 aa20.89■□□□□ 0.94
TRIM28-201ENST00000253024 PTGER3P43115 390 aa20.89■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms